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PORTNAME= phrap
PORTVERSION= 1.090518
CATEGORIES= biology
MASTER_SITES= # put the tarball manually
DISTFILES= distrib.tar.gz
DIST_SUBDIR= ${PORTNAME}
MAINTAINER= mzaki@m.u-tokyo.ac.jp
COMMENT= Program for assembling shotgun DNA sequence data
RESTRICTED= Redistribution is not permitted in any form. You must request the tarball via e-mail. Free for academic use.
.if defined(PACKAGE_BUILDING)
IGNORE= distribution files must be obtained via the authors
.endif
NO_WRKSUBDIR= yes
MAKEFILE= makefile
ALL_TARGET= all
BINARIES= calf_merge pcluster cross_match loco phrap swat
SCRIPTS= phrapview
PORTDATA= BLOSUM50 BLOSUM62 PAM250 mat50 mat70 mb_matrix penalty2 vector.seq
PORTDOCS= general.doc phrap.doc swat.doc
OPTIONS_DEFINE= DOCS
.include <bsd.port.pre.mk>
.for f in ${DISTFILES}
.if !exists(${DISTDIR}/${DIST_SUBDIR}/${f})
IGNORE= you must request the source code \(${DISTFILES}\) via e-mail, place it manually in ${DISTDIR}/${DIST_SUBDIR}, and then try it again
.endif
.endfor
do-install:
.for f in ${BINARIES}
@${INSTALL_PROGRAM} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/
.endfor
.for f in ${SCRIPTS}
@${INSTALL_SCRIPT} ${WRKSRC}/${f} ${STAGEDIR}${PREFIX}/bin/
.endfor
@${MKDIR} ${STAGEDIR}${DATADIR}
.for f in ${PORTDATA}
@${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DATADIR}
.endfor
@${MKDIR} ${STAGEDIR}${DOCSDIR}
.for f in ${PORTDOCS}
@${INSTALL_DATA} ${WRKSRC}/${f} ${STAGEDIR}${DOCSDIR}
.endfor
.include <bsd.port.post.mk>
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