biology/ruby-bio/pkg-plist


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%%RUBY_DOCDIR%%/bio/ChangeLog
%%RUBY_DOCDIR%%/bio/Changes-0.7.rd
%%RUBY_DOCDIR%%/bio/README.rdoc
%%RUBY_DOCDIR%%/bio/Tutorial.rd
%%RUBY_DOCDIR%%/bio/ja/Tutorial.rd.ja
%%RUBY_EXAMPLESDIR%%/bio/any2fasta.rb
%%RUBY_EXAMPLESDIR%%/bio/biofetch.rb
%%RUBY_EXAMPLESDIR%%/bio/color_scheme_na.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_aaindex.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_aminoacid.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_bl2seq_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_blast_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_codontable.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_das.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_fasta_remote.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_fastaformat.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_genbank.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_genscan_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_gff1.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_go.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_hmmer_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_compound.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_drug.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_genome.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_glycan.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_orthology.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_kegg_reaction.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_litdb.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_locations.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_ncbi_rest.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_nucleicacid.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_pathway.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_prosite.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_psort.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_psort_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_pubmed.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_sequence.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_sirna.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_sosui_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_targetp_report.rb
%%RUBY_EXAMPLESDIR%%/bio/demo_tmhmm_report.rb
%%RUBY_EXAMPLESDIR%%/bio/enzymes.rb
%%RUBY_EXAMPLESDIR%%/bio/fasta2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/fastagrep.rb
%%RUBY_EXAMPLESDIR%%/bio/fastasort.rb
%%RUBY_EXAMPLESDIR%%/bio/fsplit.rb
%%RUBY_EXAMPLESDIR%%/bio/gb2fasta.rb
%%RUBY_EXAMPLESDIR%%/bio/gb2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/gbtab2mysql.rb
%%RUBY_EXAMPLESDIR%%/bio/genes2nuc.rb
%%RUBY_EXAMPLESDIR%%/bio/genes2pep.rb
%%RUBY_EXAMPLESDIR%%/bio/genes2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/genome2rb.rb
%%RUBY_EXAMPLESDIR%%/bio/genome2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/goslim.rb
%%RUBY_EXAMPLESDIR%%/bio/gt2fasta.rb
%%RUBY_EXAMPLESDIR%%/bio/na2aa.rb
%%RUBY_EXAMPLESDIR%%/bio/pmfetch.rb
%%RUBY_EXAMPLESDIR%%/bio/pmsearch.rb
%%RUBY_EXAMPLESDIR%%/bio/ssearch2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/tdiary.rb
%%RUBY_EXAMPLESDIR%%/bio/test_phyloxml_big.rb
%%RUBY_EXAMPLESDIR%%/bio/tfastx2tab.rb
%%RUBY_EXAMPLESDIR%%/bio/vs-genes.rb
%%RUBY_MODEXAMPLESDIR%%/benchmark_clustalw_report.rb
%%RUBY_MODEXAMPLESDIR%%/seqdatabase.ini
%%RUBY_MODEXAMPLESDIR%%/test_restriction_enzyme_long.rb
%%RUBY_SITELIBDIR%%/bio.rb
%%RUBY_SITELIBDIR%%/bio/alignment.rb
%%RUBY_SITELIBDIR%%/bio/appl/bl2seq/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/format0.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/format8.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/genomenet.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/ncbioptions.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/remote.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/rexml.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/rpsblast.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/wublast.rb
%%RUBY_SITELIBDIR%%/bio/appl/blast/xmlparser.rb
%%RUBY_SITELIBDIR%%/bio/appl/blat/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/clustalw.rb
%%RUBY_SITELIBDIR%%/bio/appl/clustalw/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/emboss.rb
%%RUBY_SITELIBDIR%%/bio/appl/fasta.rb
%%RUBY_SITELIBDIR%%/bio/appl/fasta/format10.rb
%%RUBY_SITELIBDIR%%/bio/appl/gcg/msf.rb
%%RUBY_SITELIBDIR%%/bio/appl/gcg/seq.rb
%%RUBY_SITELIBDIR%%/bio/appl/genscan/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/hmmer.rb
%%RUBY_SITELIBDIR%%/bio/appl/hmmer/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/iprscan/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/mafft.rb
%%RUBY_SITELIBDIR%%/bio/appl/mafft/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/meme/mast.rb
%%RUBY_SITELIBDIR%%/bio/appl/meme/mast/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/meme/motif.rb
%%RUBY_SITELIBDIR%%/bio/appl/muscle.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/baseml.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/baseml/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml/rates.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/codeml/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/common.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/common_report.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/yn00.rb
%%RUBY_SITELIBDIR%%/bio/appl/paml/yn00/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/phylip/alignment.rb
%%RUBY_SITELIBDIR%%/bio/appl/phylip/distance_matrix.rb
%%RUBY_SITELIBDIR%%/bio/appl/probcons.rb
%%RUBY_SITELIBDIR%%/bio/appl/psort.rb
%%RUBY_SITELIBDIR%%/bio/appl/psort/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/pts1.rb
%%RUBY_SITELIBDIR%%/bio/appl/sim4.rb
%%RUBY_SITELIBDIR%%/bio/appl/sim4/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/sosui/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/spidey/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/targetp/report.rb
%%RUBY_SITELIBDIR%%/bio/appl/tcoffee.rb
%%RUBY_SITELIBDIR%%/bio/appl/tmhmm/report.rb
%%RUBY_SITELIBDIR%%/bio/command.rb
%%RUBY_SITELIBDIR%%/bio/compat/features.rb
%%RUBY_SITELIBDIR%%/bio/compat/references.rb
%%RUBY_SITELIBDIR%%/bio/data/aa.rb
%%RUBY_SITELIBDIR%%/bio/data/codontable.rb
%%RUBY_SITELIBDIR%%/bio/data/na.rb
%%RUBY_SITELIBDIR%%/bio/db.rb
%%RUBY_SITELIBDIR%%/bio/db/aaindex.rb
%%RUBY_SITELIBDIR%%/bio/db/biosql/biosql_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/biosql/sequence.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/common.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/embl.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/embl_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/format_embl.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/sptr.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/swissprot.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/trembl.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/uniprot.rb
%%RUBY_SITELIBDIR%%/bio/db/embl/uniprotkb.rb
%%RUBY_SITELIBDIR%%/bio/db/fantom.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/defline.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/fasta_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/format_fasta.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/format_qual.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/qual.rb
%%RUBY_SITELIBDIR%%/bio/db/fasta/qual_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/fastq.rb
%%RUBY_SITELIBDIR%%/bio/db/fastq/fastq_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/fastq/format_fastq.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/common.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/ddbj.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/format_genbank.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/genbank_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/genpept.rb
%%RUBY_SITELIBDIR%%/bio/db/genbank/refseq.rb
%%RUBY_SITELIBDIR%%/bio/db/gff.rb
%%RUBY_SITELIBDIR%%/bio/db/go.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/brite.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/common.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/compound.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/drug.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/enzyme.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/expression.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/genes.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/genome.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/glycan.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/keggtab.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/kgml.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/module.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/orthology.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/pathway.rb
%%RUBY_SITELIBDIR%%/bio/db/kegg/reaction.rb
%%RUBY_SITELIBDIR%%/bio/db/lasergene.rb
%%RUBY_SITELIBDIR%%/bio/db/litdb.rb
%%RUBY_SITELIBDIR%%/bio/db/medline.rb
%%RUBY_SITELIBDIR%%/bio/db/nbrf.rb
%%RUBY_SITELIBDIR%%/bio/db/newick.rb
%%RUBY_SITELIBDIR%%/bio/db/nexus.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/atom.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/chain.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/chemicalcomponent.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/model.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/pdb.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/residue.rb
%%RUBY_SITELIBDIR%%/bio/db/pdb/utils.rb
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml.xsd
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_elements.rb
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_parser.rb
%%RUBY_SITELIBDIR%%/bio/db/phyloxml/phyloxml_writer.rb
%%RUBY_SITELIBDIR%%/bio/db/prosite.rb
%%RUBY_SITELIBDIR%%/bio/db/rebase.rb
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/abif.rb
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/chromatogram.rb
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/chromatogram_to_biosequence.rb
%%RUBY_SITELIBDIR%%/bio/db/sanger_chromatogram/scf.rb
%%RUBY_SITELIBDIR%%/bio/db/soft.rb
%%RUBY_SITELIBDIR%%/bio/db/transfac.rb
%%RUBY_SITELIBDIR%%/bio/feature.rb
%%RUBY_SITELIBDIR%%/bio/io/biosql/ar-biosql.rb
%%RUBY_SITELIBDIR%%/bio/io/biosql/biosql.rb
%%RUBY_SITELIBDIR%%/bio/io/biosql/config/database.yml
%%RUBY_SITELIBDIR%%/bio/io/das.rb
%%RUBY_SITELIBDIR%%/bio/io/fastacmd.rb
%%RUBY_SITELIBDIR%%/bio/io/fetch.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/autodetection.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/bdb.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/buffer.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/index.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/indexer.rb
%%RUBY_SITELIBDIR%%/bio/io/flatfile/splitter.rb
%%RUBY_SITELIBDIR%%/bio/io/hinv.rb
%%RUBY_SITELIBDIR%%/bio/io/ncbirest.rb
%%RUBY_SITELIBDIR%%/bio/io/pubmed.rb
%%RUBY_SITELIBDIR%%/bio/io/registry.rb
%%RUBY_SITELIBDIR%%/bio/io/sql.rb
%%RUBY_SITELIBDIR%%/bio/io/togows.rb
%%RUBY_SITELIBDIR%%/bio/location.rb
%%RUBY_SITELIBDIR%%/bio/map.rb
%%RUBY_SITELIBDIR%%/bio/pathway.rb
%%RUBY_SITELIBDIR%%/bio/reference.rb
%%RUBY_SITELIBDIR%%/bio/sequence.rb
%%RUBY_SITELIBDIR%%/bio/sequence/aa.rb
%%RUBY_SITELIBDIR%%/bio/sequence/adapter.rb
%%RUBY_SITELIBDIR%%/bio/sequence/common.rb
%%RUBY_SITELIBDIR%%/bio/sequence/compat.rb
%%RUBY_SITELIBDIR%%/bio/sequence/dblink.rb
%%RUBY_SITELIBDIR%%/bio/sequence/format.rb
%%RUBY_SITELIBDIR%%/bio/sequence/format_raw.rb
%%RUBY_SITELIBDIR%%/bio/sequence/generic.rb
%%RUBY_SITELIBDIR%%/bio/sequence/na.rb
%%RUBY_SITELIBDIR%%/bio/sequence/quality_score.rb
%%RUBY_SITELIBDIR%%/bio/sequence/sequence_masker.rb
%%RUBY_SITELIBDIR%%/bio/shell.rb
%%RUBY_SITELIBDIR%%/bio/shell/core.rb
%%RUBY_SITELIBDIR%%/bio/shell/demo.rb
%%RUBY_SITELIBDIR%%/bio/shell/interface.rb
%%RUBY_SITELIBDIR%%/bio/shell/irb.rb
%%RUBY_SITELIBDIR%%/bio/shell/object.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/blast.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/codon.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/das.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/emboss.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/entry.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/flatfile.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/midi.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/ncbirest.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/obda.rb
%%RUBY_SITELIBDIR%%/bio/shell/plugin/psort.rb
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%%RUBY_SITELIBDIR%%/bio/util/color_scheme.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/buried.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/helix.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/hydropathy.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/nucleotide.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/strand.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/taylor.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/turn.rb
%%RUBY_SITELIBDIR%%/bio/util/color_scheme/zappo.rb
%%RUBY_SITELIBDIR%%/bio/util/contingency_table.rb
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%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/double_stranded/cut_locations_in_enzyme_notation.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/enzymes.yaml
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_range.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/cut_ranges.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/horizontal_cut_range.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/calculated_cuts.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragment.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/sequence_range/fragments.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/range/vertical_cut_range.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand/cut_locations_in_enzyme_notation.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/single_strand_complement.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/sorted_num_array.rb
%%RUBY_SITELIBDIR%%/bio/util/restriction_enzyme/string_formatting.rb
%%RUBY_SITELIBDIR%%/bio/util/sirna.rb
%%RUBY_SITELIBDIR%%/bio/version.rb
bin/bioruby
bin/br_biofetch
bin/br_bioflat
bin/br_biogetseq
bin/br_pmfetch
etc/bioinformatics/seqdatabase.ini.sample