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--- scripts/snpSift.orig 2021-04-13 22:40:00 UTC
+++ scripts/snpSift
@@ -13,9 +13,9 @@
# Created by: Brad Chapman
#---------------------------------------------------------------------------------------------------
-jardir="$(cd "$(dirname "$0")" && cd ".." && pwd -P)"
+jardir=%%JAVAJARDIR%%/snpeff
+JAVA_HOME=%%PREFIX%%/openjdk12
-java=java
if [ -e "$JAVA_HOME/bin/java" ]
then
java="$JAVA_HOME/bin/java"
@@ -44,4 +44,3 @@ if [ "$jvm_mem_opts" == "" ]; then
fi
exec $java $jvm_mem_opts $jvm_prop_opts -jar ${jardir}/SnpSift.jar $pass_args
-exit
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