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PORTNAME= stacks
DISTVERSION= 2.4
PORTREVISION= 2
CATEGORIES= biology perl5 python
MASTER_SITES= http://catchenlab.life.illinois.edu/stacks/source/
MAINTAINER= jwb@FreeBSD.org
COMMENT= Software pipeline for building loci from short-read sequences
LICENSE= GPLv2
LICENSE_FILE= ${WRKSRC}/LICENSE
USES= compiler:c++11-lang gmake python shebangfix
SHEBANG_FILES= scripts/*.pl scripts/*.py \
scripts/stacks-integrate-alignments scripts/stacks-gdb
GNU_CONFIGURE= yes
LDFLAGS+= -lpthread
.include <bsd.port.pre.mk>
# Temp workaround, see PR 230888
.if ${ARCH} == i386
USE_GCC= yes
.endif
.include <bsd.port.post.mk>
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