aboutsummaryrefslogtreecommitdiff
path: root/science/Makefile
blob: 24c2e04d14c0b7d6837f5c5ef9ee42bf37514209 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
    COMMENT = Scientific ports

    SUBDIR += 2d-rewriter
    SUBDIR += ALPSCore
    SUBDIR += InsightToolkit
    SUBDIR += PETSc
    SUBDIR += R-cran-AMORE
    SUBDIR += R-cran-DCluster
    SUBDIR += R-cran-Epi
    SUBDIR += R-cran-FAdist
    SUBDIR += R-cran-bayesm
    SUBDIR += R-cran-cmprsk
    SUBDIR += R-cran-e1071
    SUBDIR += R-cran-eco
    SUBDIR += R-cran-epicalc
    SUBDIR += R-cran-etm
    SUBDIR += R-cran-fastICA
    SUBDIR += R-cran-kernlab
    SUBDIR += R-cran-snow
    SUBDIR += R-cran-som
    SUBDIR += R-cran-udunits2
    SUBDIR += abinit
    SUBDIR += afni
    SUBDIR += agrum
    SUBDIR += aircraft-datcom
    SUBDIR += antioch
    SUBDIR += apbs
    SUBDIR += atompaw
    SUBDIR += avogadro2
    SUBDIR += avogadrolibs
    SUBDIR += axom
    SUBDIR += bagel
    SUBDIR += bddsolve
    SUBDIR += berkeleygw
    SUBDIR += bodr
    SUBDIR += buddy
    SUBDIR += cdcl
    SUBDIR += cdf
    SUBDIR += cdk
    SUBDIR += cdo
    SUBDIR += cgnslib
    SUBDIR += cgribex
    SUBDIR += checkmol
    SUBDIR += chemical-mime-data
    SUBDIR += chemps2
    SUBDIR += chemtool
    SUBDIR += chemtool-devel
    SUBDIR += chrono
    SUBDIR += clhep
    SUBDIR += clipper
    SUBDIR += code_saturne
    SUBDIR += colt
    SUBDIR += conduit
    SUBDIR += coordgenlibs
    SUBDIR += cp2k
    SUBDIR += cp2k-data
    SUBDIR += crf++
    SUBDIR += dakota
    SUBDIR += dalton
    SUBDIR += dcl
    SUBDIR += devisor
    SUBDIR += dftbplus
    SUBDIR += dkh
    SUBDIR += dlib-cpp
    SUBDIR += drawxtl
    SUBDIR += dvc
    SUBDIR += eccodes
    SUBDIR += elk
    SUBDIR += elmerfem
    SUBDIR += epte
    SUBDIR += erd
    SUBDIR += ergo
    SUBDIR += erkale
    SUBDIR += erkale-pseudopotentials
    SUBDIR += fastcap
    SUBDIR += fasthenry
    SUBDIR += fastjet
    SUBDIR += fisicalab
    SUBDIR += fsom
    SUBDIR += fvcom
    SUBDIR += fvcom-mpi
    SUBDIR += gabedit
    SUBDIR += gamess-us
    SUBDIR += gchemutils
    SUBDIR += gdma
    SUBDIR += getdp
    SUBDIR += ghemical
    SUBDIR += ghmm
    SUBDIR += gnudatalanguage
    SUBDIR += gpaw-setups
    SUBDIR += gramps
    SUBDIR += grib_api
    SUBDIR += gromacs
    SUBDIR += gsmc
    SUBDIR += gtamsanalyzer
    SUBDIR += h5utils
    SUBDIR += h5z-zfp
    SUBDIR += harminv
    SUBDIR += hdf
    SUBDIR += hdf5
    SUBDIR += hdf5-18
    SUBDIR += healpix
    SUBDIR += hepmc3
    SUBDIR += highfive
    SUBDIR += hypre
    SUBDIR += iboview
    SUBDIR += isaac-cfd
    SUBDIR += jdftx
    SUBDIR += jmol
    SUBDIR += jstrack
    SUBDIR += kalzium
    SUBDIR += kim-api
    SUBDIR += kst2
    SUBDIR += lammps
    SUBDIR += lamprop
    SUBDIR += latte
    SUBDIR += libaec
    SUBDIR += libccp4
    SUBDIR += libcint
    SUBDIR += libctl
    SUBDIR += libecpint
    SUBDIR += libefp
    SUBDIR += libgeodecomp
    SUBDIR += libghemical
    SUBDIR += libgridxc
    SUBDIR += libint
    SUBDIR += libint2
    SUBDIR += libkml
    SUBDIR += liblinear
    SUBDIR += libmsym
    SUBDIR += liboglappth
    SUBDIR += libquantum
    SUBDIR += libssm
    SUBDIR += libsvm
    SUBDIR += libsvm-python
    SUBDIR += libvdwxc
    SUBDIR += libxc
    SUBDIR += liggghts
    SUBDIR += luscus
    SUBDIR += madness
    SUBDIR += maeparser
    SUBDIR += massxpert
    SUBDIR += mbdyn
    SUBDIR += mcstas
    SUBDIR += mcstas-comps
    SUBDIR += mcxtrace
    SUBDIR += mcxtrace-comps
    SUBDIR += mdynamix
    SUBDIR += medit
    SUBDIR += metaphysicl
    SUBDIR += minc2
    SUBDIR += mmdb2
    SUBDIR += mmtf-cpp
    SUBDIR += mol2ps
    SUBDIR += molgif
    SUBDIR += molscript
    SUBDIR += molsketch
    SUBDIR += mpb
    SUBDIR += mpqc
    SUBDIR += msms
    SUBDIR += multiwfn
    SUBDIR += namd
    SUBDIR += nest
    SUBDIR += netcdf
    SUBDIR += netcdf-cxx
    SUBDIR += netcdf-fortran
    SUBDIR += nifticlib
    SUBDIR += nwchem
    SUBDIR += nwchem-data
    SUBDIR += octopus
    SUBDIR += openbabel
    SUBDIR += openkim
    SUBDIR += openkim-models
    SUBDIR += opensim-core
    SUBDIR += opensph
    SUBDIR += opsin
    SUBDIR += p5-Algorithm-SVMLight
    SUBDIR += p5-Chemistry-3DBuilder
    SUBDIR += p5-Chemistry-Bond-Find
    SUBDIR += p5-Chemistry-Canonicalize
    SUBDIR += p5-Chemistry-Elements
    SUBDIR += p5-Chemistry-File-MDLMol
    SUBDIR += p5-Chemistry-File-Mopac
    SUBDIR += p5-Chemistry-File-PDB
    SUBDIR += p5-Chemistry-File-SLN
    SUBDIR += p5-Chemistry-File-SMARTS
    SUBDIR += p5-Chemistry-File-SMILES
    SUBDIR += p5-Chemistry-File-VRML
    SUBDIR += p5-Chemistry-File-XYZ
    SUBDIR += p5-Chemistry-FormulaPattern
    SUBDIR += p5-Chemistry-InternalCoords
    SUBDIR += p5-Chemistry-Isotope
    SUBDIR += p5-Chemistry-MacroMol
    SUBDIR += p5-Chemistry-MidasPattern
    SUBDIR += p5-Chemistry-Mok
    SUBDIR += p5-Chemistry-Mol
    SUBDIR += p5-Chemistry-Pattern
    SUBDIR += p5-Chemistry-Reaction
    SUBDIR += p5-Chemistry-Ring
    SUBDIR += p5-Geo-BUFR
    SUBDIR += p5-Geo-Coordinates-Converter
    SUBDIR += p5-Geo-Coordinates-Converter-iArea
    SUBDIR += p5-Geo-WebService-Elevation-USGS
    SUBDIR += p5-Mcstas-Tools
    SUBDIR += p5-PerlMol
    SUBDIR += p5-Physics-Unit
    SUBDIR += packmol
    SUBDIR += pagmo2
    SUBDIR += paje
    SUBDIR += pcmsolver
    SUBDIR += plumed
    SUBDIR += pnetcdf
    SUBDIR += pulseview
    SUBDIR += py-DendroPy
    SUBDIR += py-GPy
    SUBDIR += py-GPyOpt
    SUBDIR += py-MDAnalysis
    SUBDIR += py-MDAnalysisTests
    SUBDIR += py-OpenFermion
    SUBDIR += py-PyFR
    SUBDIR += py-SimpleSpectral
    SUBDIR += py-abipy
    SUBDIR += py-access
    SUBDIR += py-asdf
    SUBDIR += py-ase
    SUBDIR += py-avogadrolibs
    SUBDIR += py-cdo
    SUBDIR += py-chainer
    SUBDIR += py-chainer-chemistry
    SUBDIR += py-chempy
    SUBDIR += py-coards
    SUBDIR += py-dipy
    SUBDIR += py-dlib
    SUBDIR += py-eccodes
    SUBDIR += py-esda
    SUBDIR += py-geolinks
    SUBDIR += py-geomet
    SUBDIR += py-geometer
    SUBDIR += py-geometric
    SUBDIR += py-gpaw
    SUBDIR += py-gsd
    SUBDIR += py-h5json
    SUBDIR += py-h5py
    SUBDIR += py-inequality
    SUBDIR += py-jupyter_jsmol
    SUBDIR += py-kim-query
    SUBDIR += py-kinematics
    SUBDIR += py-kliff
    SUBDIR += py-liac-arff
    SUBDIR += py-libpysal
    SUBDIR += py-lifelines
    SUBDIR += py-mdp
    SUBDIR += py-mmtf-python
    SUBDIR += py-molmod
    SUBDIR += py-moltemplate
    SUBDIR += py-netCDF4
    SUBDIR += py-netcdf-flattener
    SUBDIR += py-nibabel
    SUBDIR += py-nilearn
    SUBDIR += py-obspy
    SUBDIR += py-oddt
    SUBDIR += py-openpiv
    SUBDIR += py-paida
    SUBDIR += py-paramz
    SUBDIR += py-phono3py
    SUBDIR += py-phonopy
    SUBDIR += py-pupynere
    SUBDIR += py-pyaixi
    SUBDIR += py-pycsw
    SUBDIR += py-pydicom
    SUBDIR += py-pygeodesy
    SUBDIR += py-pygeometa
    SUBDIR += py-pygmo2
    SUBDIR += py-pymatgen
    SUBDIR += py-pymol
    SUBDIR += py-pyosf
    SUBDIR += py-pysal
    SUBDIR += py-pyteomics
    SUBDIR += py-qcelemental
    SUBDIR += py-qcengine
    SUBDIR += py-qspin
    SUBDIR += py-quantities
    SUBDIR += py-rmf
    SUBDIR += py-rmsd
    SUBDIR += py-ruffus
    SUBDIR += py-scikit-fuzzy
    SUBDIR += py-scikit-learn
    SUBDIR += py-scikit-optimize
    SUBDIR += py-scikit-sparse
    SUBDIR += py-scimath
    SUBDIR += py-scipy
    SUBDIR += py-scoria
    SUBDIR += py-segregation
    SUBDIR += py-segyio
    SUBDIR += py-spaghetti
    SUBDIR += py-spglib
    SUBDIR += py-tensorflow
    SUBDIR += py-tobler
    SUBDIR += py-veusz
    SUBDIR += pybrain
    SUBDIR += pynn
    SUBDIR += qbox
    SUBDIR += qcl
    SUBDIR += qiskit-aer
    SUBDIR += qmcpack
    SUBDIR += quantum-espresso
    SUBDIR += quantum-espresso-pseudopotentials
    SUBDIR += qwalk
    SUBDIR += rdkit
    SUBDIR += rmf
    SUBDIR += rubygem-ai4r
    SUBDIR += rubygem-cdo
    SUBDIR += rubygem-rgeo
    SUBDIR += rubygem-rgeo-geojson
    SUBDIR += rubygem-rgeo-proj4
    SUBDIR += rubygem-rgeo-shapefile
    SUBDIR += rubygem-ruby-dcl
    SUBDIR += rubygem-ruby-netcdf
    SUBDIR += scidavis
    SUBDIR += segyio
    SUBDIR += shelxle
    SUBDIR += siesta
    SUBDIR += sigrok-cli
    SUBDIR += sigrok-firmware
    SUBDIR += sigrok-firmware-fx2lafw
    SUBDIR += sigrok-firmware-utils
    SUBDIR += silo
    SUBDIR += simbody
    SUBDIR += simgrid
    SUBDIR += simint
    SUBDIR += simlib
    SUBDIR += simsmith
    SUBDIR += smoldyn
    SUBDIR += sparta
    SUBDIR += spglib
    SUBDIR += step
    SUBDIR += svmlight
    SUBDIR += szip
    SUBDIR += teem
    SUBDIR += tfel
    SUBDIR += tfel-edf
    SUBDIR += thermofun
    SUBDIR += tinker
    SUBDIR += udunits
    SUBDIR += v_sim
    SUBDIR += vipster
    SUBDIR += vmd
    SUBDIR += voro++
    SUBDIR += votca
    SUBDIR += wannier90
    SUBDIR += wwplot
    SUBDIR += wxmacmolplt
    SUBDIR += xcrysden
    SUBDIR += xdrawchem
    SUBDIR += xtb
    SUBDIR += yoda

.include <bsd.port.subdir.mk>