blob: 99efe584a37bdcb4ee6706b33896f76145d08133 (
plain) (
blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
|
# Created by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
PORTNAME= vmd
DISTVERSION= 1.9.3
PORTREVISION= 9
CATEGORIES= science graphics python tcl tk
MASTER_SITES= http://jedi.ks.uiuc.edu/~johns/raytracer/files/0.99b6/:tachyon \
http://www.photonlimited.com/~johns/tachyon/files/0.99b6/:tachyon \
http://webclu.bio.wzw.tum.de/stride/:stride \
ftp://ftp.ebi.ac.uk/pub/software/unix/stride/src/:stride
DISTFILES= ${VMD_DIST} \
${TACHYON_DIST}:tachyon \
${STRIDE_DIST}:stride
MAINTAINER= ports@FreeBSD.org
COMMENT= Molecular visualization program
LICENSE= VMD BSD3CLAUSE STRIDE
LICENSE_COMB= multi
BUILD_DEPENDS= makedepend:devel/makedepend \
${PYNUMPY}
LIB_DEPENDS= libexpat.so:textproc/expat2 \
libfltk.so:x11-toolkits/fltk \
libnetcdf.so:science/netcdf
RUN_DEPENDS= ${PYNUMPY}
LICENSE_FILE_VMD= ${WRKSRC}/LICENSE
LICENSE_PERMS_VMD= no-auto-accept
LICENSE_NAME_VMD= Visual Molecular Dynamics Software License Agreement
LICENSE_DISTFILES_VMD= ${VMD_DIST}
LICENSE_FILE_BSD3CLAUSE= ${WRKSRC}/lib/tachyon/Copyright
LICENSE_DISTFILES_BSD3CLAUSE= ${TACHYON_DIST}
LICENSE_TEXT_STRIDE= ${FILESDIR}/stride.txt
LICENSE_PERMS_STRIDE= dist-mirror pkg-mirror auto-accept
LICENSE_NAME_STRIDE= Stride Copyright Notice
LICENSE_DISTFILES_STRIDE=${STRIDE_DIST}
USES= gl gmake perl5 python shebangfix sqlite tcl tk xorg
SHEBANG_FILES= ${WRKDIR}/plugins/topotools/*.tcl
USE_PERL5= build
USE_GL= gl glu
USE_XORG= x11
ONLY_FOR_ARCHS= amd64 i386
CONFIGURE_ENV= PYTHON_INCLUDE_DIR=${PYTHON_INCLUDEDIR} \
PYTHON_LIBRARY_DIR=${PYTHON_LIBDIR} \
NUMPY_INCLUDE_DIR=${PYTHON_SITELIBDIR}/numpy/core/include \
NUMPY_LIBRARY_DIR=${PYTHON_SITELIBDIR} \
TCL_INCLUDE_DIR=${TCL_INCLUDEDIR} \
TCL_LIBRARY_DIR=${LOCALBASE}/lib \
TK_INCLUDE_DIR=${TK_INCLUDEDIR} \
TK_LIBRARY_DIR=${LOCALBASE}/lib
CONFIGURE_ARGS= ${VMD_ARCH} OPENGL FLTK TK IMD TCL PTHREADS LIBTACHYON NETCDF NUMPY PYTHON
INSTALL_WRKSRC= ${WRKSRC}/src
MAKE_ENV= EXPATINC=-I${LOCALBASE}/include \
EXPATLIB=-L${LOCALBASE}/lib \
EXPATLDFLAGS=-lexpat \
EXPATDYNAMIC=1 \
NETCDFINC=-I${LOCALBASE}/include \
NETCDFLIB=-L${LOCALBASE}/lib \
NETCDFLDFLAGS=-lnetcdf \
SQLITEINC=-I${LOCALBASE}/include \
SQLITELIB=-L${LOCALBASE}/lib \
SQLITELDFLAGS=-lsqlite3 \
SQLITEDYNAMIC=1 \
TCLLIB=-L${LOCALBASE}/lib \
TCLINC=-I${TCL_INCLUDEDIR} \
TCLLDFLAGS=-ltcl${TCL_VER:S/.//} \
TKLDFLAGS="-ltk${TK_VER:S/.//} -lX11"
VMD_DIST= ${PORTNAME}-${DISTVERSION}.src.tar.gz
TACHYON_DIST= tachyon-0.99b6.tar.gz
STRIDE_DIST= stride.tar.gz
STRIDE_DOC= stride.doc
.include <bsd.port.pre.mk>
.if ${ARCH} == "amd64"
VMD_ARCH= FREEBSDAMD64
.else
VMD_ARCH= FREEBSD
.endif
PLIST_SUB+= VMD_ARCH=${VMD_ARCH}
# Check for VMD sources
.if !exists(${DISTDIR}/${VMD_DIST})
IGNORE= license restrictions require manual fetching of the distribution\
source. Please visit http://www.ks.uiuc.edu/Development/Download/download.cgi?PackageName=VMD\
with a browser. You will be required to register, log in, and accept\
the University of Illinois agreement before you can download the\
${VMD_DIST} source file. Place this file in ${DISTDIR} and try again.
.endif
do-extract:
${MKDIR} ${WRKDIR} ${WRKSRC}/lib/stride
${TAR} -xzf ${DISTDIR}/${VMD_DIST} -C ${WRKDIR}
${TAR} -xzf ${WRKSRC}/lib/surf/surf.tar.Z -C ${WRKSRC}/lib/surf
${TAR} -xzf ${DISTDIR}/${TACHYON_DIST} -C ${WRKSRC}/lib
${TAR} -xzf ${DISTDIR}/${STRIDE_DIST} -C ${WRKSRC}/lib/stride
post-patch:
${REINPLACE_CMD} \
-e "s|-lpython2.5|-l${PYTHON_VERSION}${PYTHON_ABIVER}|" \
-e "s|/usr/local|${LOCALBASE}|g" \
-e "s|-fno-for-scope||g" \
-e "s/\"gcc\"/\"${CC}\"/;s/\"g++\"/\"${CXX}\"/" \
${WRKSRC}/configure
${REINPLACE_CMD} -e "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/Makefile
${REINPLACE_CMD} "s/.SILENT:/#.SILENT:/" ${WRKDIR}/plugins/*/Makefile
${REINPLACE_CMD} "s%log2f(\([^ ,]*\))%logf(\1)/(float)M_LN2%g" \
${WRKSRC}/src/Orbital.C
${REINPLACE_CMD} -E "s/(SHLD[[:space:]]*=[[:space:]]*)gcc/\1${CC}/" \
${WRKDIR}/plugins/Make-arch
${REINPLACE_CMD} -E "s/(CC[[:space:]]*=[[:space:]]*)(gcc|cc)/\1${CC}/" \
${WRKSRC}/lib/stride/Makefile \
${WRKSRC}/lib/surf/Makefile \
${WRKSRC}/lib/tachyon/unix/Make-arch \
${WRKDIR}/plugins/cionize/Makefile.specialbuilds \
${WRKDIR}/plugins/cionize/Makefile.mine \
${WRKDIR}/plugins/cionize/Makefile.testing \
${WRKDIR}/plugins/Make-arch \
${WRKDIR}/plugins/molfile_plugin/f77/Makefile
${REINPLACE_CMD} -E "s/(CXX[[:space:]]*=[[:space:]]*)g\+\+/\1${CXX}/" \
${WRKDIR}/plugins/fmtool/Makefile.specialbuilds \
${WRKDIR}/plugins/hesstrans/src/foo/Makefile \
${WRKDIR}/plugins/hesstrans/src/foo/nm_gnu.mak \
${WRKDIR}/plugins/Make-arch
${REINPLACE_CMD} -e "s/return *;/return 0;/g" \
${WRKSRC}/lib/surf/*.c
do-build:
${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} bsd -C ${WRKSRC}/lib/tachyon/unix
${MV} ${WRKSRC}/lib/tachyon/compile/bsd/tachyon ${WRKSRC}/lib/tachyon/tachyon_${VMD_ARCH}
${SETENV} ${MAKE_ENV} PLUGINDIR=${WRKSRC}/plugins ${MAKE_CMD} ${VMD_ARCH} distrib -C ${WRKDIR}/plugins
cd ${WRKSRC} && ${SETENV} ${CONFIGURE_ENV} ${CONFIGURE_CMD} ${CONFIGURE_ARGS}
${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} all -C ${WRKSRC}/src
${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} depend -C ${WRKSRC}/lib/surf
${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} surf -C ${WRKSRC}/lib/surf
${MV} ${WRKSRC}/lib/surf/surf ${WRKSRC}/lib/surf/surf_${VMD_ARCH}
${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${_MAKE_JOBS} -C ${WRKSRC}/lib/stride
${MV} ${WRKSRC}/lib/stride/stride ${WRKSRC}/lib/stride/stride_${VMD_ARCH}
post-install:
${REINPLACE_CMD} -i '' -e 's|${STAGEDIR}||g' ${STAGEDIR}${PREFIX}/bin/vmd
${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/*${VMD_ARCH} \
${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/molfile/*.so
.for f in tcl/autopsf1.6/psfcheck.so tcl/hesstrans1.0/hesstrans.so \
tcl/mutator1.5/libalchemify.so tcl/pmepot1.0/libpmepot.so \
tcl/psfgen1.6/libpsfgen.so tcl/rnaview1.1/rnaview \
tcl/signalproc1.1/specden.so tcl/signalproc1.1/fftcmds.so \
tcl/signalproc1.1/sgsmooth.so tcl/volutil1.3/volutil \
tcl/clustalw1.1/clustalw tcl/libbiokit1.1/tcl_libbiokit.so \
tcl/libbiokit1.1/q tcl/libbiokit1.1/seqqr \
tcl/libbiokit1.1/structqr tcl/libbiokit1.1/qpair \
tcl/libbiokit1.1/rmsd tcl/libbiokit1.1/percid \
tcl/phylotree1.2/upgmaclu tcl/stamp1.2/stamp \
tcl/bossconvert1.0/Topology \
bin/catdcd5.1/catdcd bin/cionize1.0/cionize
${STRIP_CMD} ${STAGEDIR}${LOCALBASE}/lib/vmd/plugins/${VMD_ARCH}/${f}
.endfor
.include <bsd.port.post.mk>
|
