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authorNuno Teixeira <eduardo@FreeBSD.org>2024-03-02 19:40:58 +0000
committerNuno Teixeira <eduardo@FreeBSD.org>2024-03-02 19:40:58 +0000
commit01064ce0bda11469f31eaabb93e6c1eefa968661 (patch)
treea55525bba4fc8b119f1c79f7286d29fcba3428ac /biology
parent3312d5f90102d628fcf1e50c6b84ae719f66c494 (diff)
downloadports-01064ce0bda11469f31eaabb93e6c1eefa968661.tar.gz
ports-01064ce0bda11469f31eaabb93e6c1eefa968661.zip
Diffstat (limited to 'biology')
-rw-r--r--biology/samtools/Makefile2
-rw-r--r--biology/samtools/pkg-plist84
2 files changed, 44 insertions, 42 deletions
diff --git a/biology/samtools/Makefile b/biology/samtools/Makefile
index 92da7c61eff7..85603f8c1cc8 100644
--- a/biology/samtools/Makefile
+++ b/biology/samtools/Makefile
@@ -1,5 +1,6 @@
PORTNAME= samtools
DISTVERSION= 1.17
+PORTREVISION= 1
CATEGORIES= biology
MAINTAINER= jwb@FreeBSD.org
@@ -18,6 +19,7 @@ USE_GITHUB= yes
USE_PERL5= test
GNU_CONFIGURE= yes
+GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share
SHEBANG_FILES= misc/*.pl misc/plot-bamstats test/test.pl
TEST_TARGET= test
diff --git a/biology/samtools/pkg-plist b/biology/samtools/pkg-plist
index 15e146e410cd..2ef37918b44f 100644
--- a/biology/samtools/pkg-plist
+++ b/biology/samtools/pkg-plist
@@ -20,45 +20,45 @@ bin/soap2sam.pl
bin/wgsim
bin/wgsim_eval.pl
bin/zoom2sam.pl
-man/man1/samtools-addreplacerg.1.gz
-man/man1/samtools-ampliconclip.1.gz
-man/man1/samtools-ampliconstats.1.gz
-man/man1/samtools-bedcov.1.gz
-man/man1/samtools-calmd.1.gz
-man/man1/samtools-cat.1.gz
-man/man1/samtools-collate.1.gz
-man/man1/samtools-consensus.1.gz
-man/man1/samtools-coverage.1.gz
-man/man1/samtools-cram-size.1.gz
-man/man1/samtools-depad.1.gz
-man/man1/samtools-depth.1.gz
-man/man1/samtools-dict.1.gz
-man/man1/samtools-faidx.1.gz
-man/man1/samtools-fasta.1.gz
-man/man1/samtools-fastq.1.gz
-man/man1/samtools-fixmate.1.gz
-man/man1/samtools-flags.1.gz
-man/man1/samtools-flagstat.1.gz
-man/man1/samtools-fqidx.1.gz
-man/man1/samtools-head.1.gz
-man/man1/samtools-idxstats.1.gz
-man/man1/samtools-import.1.gz
-man/man1/samtools-index.1.gz
-man/man1/samtools-markdup.1.gz
-man/man1/samtools-merge.1.gz
-man/man1/samtools-mpileup.1.gz
-man/man1/samtools-phase.1.gz
-man/man1/samtools-quickcheck.1.gz
-man/man1/samtools-reference.1.gz
-man/man1/samtools-reheader.1.gz
-man/man1/samtools-reset.1.gz
-man/man1/samtools-rmdup.1.gz
-man/man1/samtools-samples.1.gz
-man/man1/samtools-sort.1.gz
-man/man1/samtools-split.1.gz
-man/man1/samtools-stats.1.gz
-man/man1/samtools-targetcut.1.gz
-man/man1/samtools-tview.1.gz
-man/man1/samtools-view.1.gz
-man/man1/samtools.1.gz
-man/man1/wgsim.1.gz
+share/man/man1/samtools-addreplacerg.1.gz
+share/man/man1/samtools-ampliconclip.1.gz
+share/man/man1/samtools-ampliconstats.1.gz
+share/man/man1/samtools-bedcov.1.gz
+share/man/man1/samtools-calmd.1.gz
+share/man/man1/samtools-cat.1.gz
+share/man/man1/samtools-collate.1.gz
+share/man/man1/samtools-consensus.1.gz
+share/man/man1/samtools-coverage.1.gz
+share/man/man1/samtools-cram-size.1.gz
+share/man/man1/samtools-depad.1.gz
+share/man/man1/samtools-depth.1.gz
+share/man/man1/samtools-dict.1.gz
+share/man/man1/samtools-faidx.1.gz
+share/man/man1/samtools-fasta.1.gz
+share/man/man1/samtools-fastq.1.gz
+share/man/man1/samtools-fixmate.1.gz
+share/man/man1/samtools-flags.1.gz
+share/man/man1/samtools-flagstat.1.gz
+share/man/man1/samtools-fqidx.1.gz
+share/man/man1/samtools-head.1.gz
+share/man/man1/samtools-idxstats.1.gz
+share/man/man1/samtools-import.1.gz
+share/man/man1/samtools-index.1.gz
+share/man/man1/samtools-markdup.1.gz
+share/man/man1/samtools-merge.1.gz
+share/man/man1/samtools-mpileup.1.gz
+share/man/man1/samtools-phase.1.gz
+share/man/man1/samtools-quickcheck.1.gz
+share/man/man1/samtools-reference.1.gz
+share/man/man1/samtools-reheader.1.gz
+share/man/man1/samtools-reset.1.gz
+share/man/man1/samtools-rmdup.1.gz
+share/man/man1/samtools-samples.1.gz
+share/man/man1/samtools-sort.1.gz
+share/man/man1/samtools-split.1.gz
+share/man/man1/samtools-stats.1.gz
+share/man/man1/samtools-targetcut.1.gz
+share/man/man1/samtools-tview.1.gz
+share/man/man1/samtools-view.1.gz
+share/man/man1/samtools.1.gz
+share/man/man1/wgsim.1.gz