4 files changed, 27 insertions, 6 deletions

diff --git a/biology/lagan/files/patch-src__glocal__rightinfluence.cpp b/biology/lagan/files/patch-src__glocal__rightinfluence.cpp
index 6ee5be408229..dd8edd2e0350 100644
--- a/biology/lagan/files/patch-src__glocal__rightinfluence.cpp
+++ b/biology/lagan/files/patch-src__glocal__rightinfluence.cpp
@@ -1,4 +1,4 @@
---- src/glocal/rightinfluence.cpp.orig
+--- src/glocal/rightinfluence.cpp.orig	2006-09-14 20:40:19 UTC
 +++ src/glocal/rightinfluence.cpp
 @@ -1,6 +1,6 @@
  #include <rightinfluence.h>
@@ -8,7 +8,7 @@
  
  // Sets the first default owner of the whole region
  void initRI(RI *RightInfluence, long long int scoreIndex) {
-@@ -18,17 +18,17 @@
+@@ -18,17 +18,17 @@ void initRI(RI *RightInfluence, long lon
  
  	// hack to aid winner selection
  	origin.score = -1;
@@ -30,3 +30,4 @@
 +    RightInfluence->act[+INF] = &my_end;
  }
  
+ 
diff --git a/biology/lagan/files/patch-src__glocal__score.cpp b/biology/lagan/files/patch-src__glocal__score.cpp
index 76a8521558ab..0360397cacbc 100644
--- a/biology/lagan/files/patch-src__glocal__score.cpp
+++ b/biology/lagan/files/patch-src__glocal__score.cpp
@@ -1,5 +1,5 @@
---- src/glocal/score.cpp.orig	2006-09-15 05:40:19.000000000 +0900
-+++ src/glocal/score.cpp	2012-10-03 00:22:50.000000000 +0900
+--- src/glocal/score.cpp.orig	2006-09-14 20:40:19 UTC
++++ src/glocal/score.cpp
 @@ -2,7 +2,7 @@
  #include<score.h>
  #include<leftinfluence.h>
diff --git a/biology/lagan/files/patch-src__utils__Glue.cpp b/biology/lagan/files/patch-src__utils__Glue.cpp
index 8b5b2b4fed25..bce5c336a1aa 100644
--- a/biology/lagan/files/patch-src__utils__Glue.cpp
+++ b/biology/lagan/files/patch-src__utils__Glue.cpp
@@ -1,5 +1,5 @@
---- src/utils/Glue.cpp.orig	2006-09-15 05:40:18.000000000 +0900
-+++ src/utils/Glue.cpp	2012-10-03 00:23:38.000000000 +0900
+--- src/utils/Glue.cpp.orig	2006-09-14 20:40:18 UTC
++++ src/utils/Glue.cpp
 @@ -6,6 +6,7 @@
  #include <fstream>
  #include <iostream>
diff --git a/biology/lagan/files/patch-src_anchors.c b/biology/lagan/files/patch-src_anchors.c
new file mode 100644
index 000000000000..00b9f66ac060
--- /dev/null
+++ b/biology/lagan/files/patch-src_anchors.c
@@ -0,0 +1,20 @@
+--- src/anchors.c.orig	2016-05-11 21:46:55 UTC
++++ src/anchors.c
+@@ -225,7 +225,7 @@ char* rolltonum(char* str) {
+   return &str[i];
+ }
+ 
+-int getline(FILE* infile, hll* tt) {
++int get_line(FILE* infile, hll* tt) {
+   char temp[1024];
+   char* help;
+   int z, h;
+@@ -248,7 +248,7 @@ hll* parseCHAOS(FILE* infile, int* totnu
+   *totnum = 0;
+   while(!feof(infile)) {
+     tt = (hll*) malloc(sizeof(hll));
+-    while (!feof(infile) && !getline(infile, tt))
++    while (!feof(infile) && !get_line(infile, tt))
+       ;
+     if (feof(infile)) break;
+     if (gapfreechunks) {