diff options
| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-15 20:09:28 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-15 20:09:28 +0000 |
| commit | 2a2e0641ceb39f20d81596f64384657f1572e676 (patch) | |
| tree | 18d758d56b74774144e3cdcb847f3fbe65c85046 /biology | |
| parent | ec10202a7c27fb6b0b5bb5f9817d9408648e7ee6 (diff) | |
| download | ports-2a2e0641ceb39f20d81596f64384657f1572e676.tar.gz ports-2a2e0641ceb39f20d81596f64384657f1572e676.zip | |
biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format
Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for
small academic examples or test inputs of arbitrary size. Output can be piped
directly to programs or redirected to a file and edited to taste.
Notes
Notes:
svn path=/head/; revision=568501
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/generand/Makefile | 18 | ||||
| -rw-r--r-- | biology/generand/distinfo | 3 | ||||
| -rw-r--r-- | biology/generand/pkg-descr | 5 |
4 files changed, 27 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 0172e7b4fac9..0143926f385f 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -48,6 +48,7 @@ SUBDIR += gatk SUBDIR += gcta SUBDIR += gemma + SUBDIR += generand SUBDIR += gff2ps SUBDIR += gmap SUBDIR += gperiodic diff --git a/biology/generand/Makefile b/biology/generand/Makefile new file mode 100644 index 000000000000..d5efb9899069 --- /dev/null +++ b/biology/generand/Makefile @@ -0,0 +1,18 @@ +# $FreeBSD$ + +PORTNAME= generand +DISTVERSION= 0.1.1 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Generate random genomic data in FASTA/FASTQ, SAM, or VCF format + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USE_GITHUB= yes +GH_ACCOUNT= auerlab + +PLIST_FILES= bin/generand man/man1/generand.1.gz + +.include <bsd.port.mk> diff --git a/biology/generand/distinfo b/biology/generand/distinfo new file mode 100644 index 000000000000..24676172077f --- /dev/null +++ b/biology/generand/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1615760855 +SHA256 (auerlab-generand-0.1.1_GH0.tar.gz) = 5e1b8099a4f9704e0241be184a54b2fbe76f556f58bc743bfc6992971d52d038 +SIZE (auerlab-generand-0.1.1_GH0.tar.gz) = 6481 diff --git a/biology/generand/pkg-descr b/biology/generand/pkg-descr new file mode 100644 index 000000000000..9330d828888f --- /dev/null +++ b/biology/generand/pkg-descr @@ -0,0 +1,5 @@ +Generate random genomic data in FASTA/FASTQ, SAM, or VCF format, suitable for +small academic examples or test inputs of arbitrary size. Output can be piped +directly to programs or redirected to a file and edited to taste. + +WWW: https://github.com/auerlab/generand |