Remove expired ports:

2021-04-01 ftp/wzdftpd: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 astro/roadmap: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cosmo: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/bomberinstinct: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/drm: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/bygfoot: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cre: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 irc/hybserv: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 irc/xaric: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 mail/elmo: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 misc/cave: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/bugs: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/dmitry: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 security/doorman: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 shells/esh: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 sysutils/cpu: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 textproc/libcrm114: No known users, dead upstream
2021-04-01 x11/wmmatrix: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/wmxss: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/tycoon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xgrab: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xbanner: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/bricons: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 x11/xmon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 games/cavezofphear: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 astro/saoimage: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/ksmp3play: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/jamin: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/musicbox-tag-editor: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/nspmod: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/cdplay: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/gimmix: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/ghostess: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/wmrecord: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/toolame: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 audio/shout: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/grappa: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/phylip: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 biology/lagan: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 cad/varkon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 cad/transcalc: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 comms/seyon: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 comms/efax: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 converters/vda2fbd: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 converters/shftool: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/openzz: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/sourcenav: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 devel/gb: Unmaintained and dead upstream
2021-04-01 dns/checkdns: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 dns/inadyn-mt: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 editors/gate: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 editors/thoteditor: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/cinc: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/e-uae: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 emulators/dtcyber: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 ftp/jftpgw: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-01 ftp/pureadmin: Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
2021-04-02 textproc/hs-pandoc-citeproc: Integrated into textproc/hs-pandoc

17 files changed, 0 insertions, 380 deletions

diff --git a/biology/Makefile b/biology/Makefile
index 31a87c33cd7a..bc59c19d8905 100644
--- a/biology/Makefile
+++ b/biology/Makefile
@@ -52,7 +52,6 @@
     SUBDIR += gmap
     SUBDIR += gperiodic
     SUBDIR += graphlan
-    SUBDIR += grappa
     SUBDIR += groopm
     SUBDIR += haplohseq
     SUBDIR += hhsuite
@@ -67,7 +66,6 @@
     SUBDIR += jalview
     SUBDIR += jellyfish
     SUBDIR += kallisto
-    SUBDIR += lagan
     SUBDIR += lamarc
     SUBDIR += libbigwig
     SUBDIR += libgtextutils
@@ -114,7 +112,6 @@
     SUBDIR += pear-merger
     SUBDIR += phrap
     SUBDIR += phred
-    SUBDIR += phylip
     SUBDIR += phyml
     SUBDIR += picard-tools
     SUBDIR += plink
diff --git a/biology/grappa/Makefile b/biology/grappa/Makefile
deleted file mode 100644
index 38f4050bc760..000000000000
--- a/biology/grappa/Makefile
+++ /dev/null
@@ -1,29 +0,0 @@
-# Created by: dbader@ece.unm.edu
-
-PORTNAME=	grappa
-PORTVERSION=	2.0
-PORTREVISION=	1
-CATEGORIES=	biology
-MASTER_SITES=	http://www.cs.unm.edu/~moret/GRAPPA/
-DISTNAME=	GRAPPA20
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Genome Rearrangements Analysis and Phylogeny Software
-
-LICENSE=	GPLv2
-
-USES=		gmake
-
-CFLAGS+=		-fcommon
-
-DEPRECATED=	Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
-EXPIRATION_DATE=2021-04-01
-
-PLIST_FILES=	bin/grappa bin/invdist bin/distmat
-
-do-install:
-	(cd ${WRKSRC} && ${INSTALL_PROGRAM} grappa ${STAGEDIR}${PREFIX}/bin)
-	${LN} -sf grappa ${STAGEDIR}${PREFIX}/bin/invdist
-	${LN} -sf grappa ${STAGEDIR}${PREFIX}/bin/distmat
-
-.include <bsd.port.mk>
diff --git a/biology/grappa/distinfo b/biology/grappa/distinfo
deleted file mode 100644
index 529c2730b151..000000000000
--- a/biology/grappa/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (GRAPPA20.tar.gz) = 19b3c5ab21c845eaf4fcf56fcf09a15db84597d8438155bb463d8f3e1bb51103
-SIZE (GRAPPA20.tar.gz) = 172261
diff --git a/biology/grappa/files/patch-Makefile b/biology/grappa/files/patch-Makefile
deleted file mode 100644
index ae02304b23c0..000000000000
--- a/biology/grappa/files/patch-Makefile
+++ /dev/null
@@ -1,49 +0,0 @@
---- Makefile.orig	2004-09-22 09:09:18.000000000 -0500
-+++ Makefile	2011-03-26 13:49:31.000000000 -0500
-@@ -47,7 +47,7 @@
- endif
- 
- # GNU C
--CC = gcc 
-+CC ?= gcc 
- 
- # Microsoft C
- # CC = cl
-@@ -62,13 +62,13 @@
- #CC = tmcc -DMPBPA
- 
- # Default CFLAGS
--CFLAGS := -D${OS} $(CONCORDE_CFLAGS) $(GMP_CFLAGS) -DINIT 
-+CFLAGS += -D${OS} $(CONCORDE_CFLAGS) $(GMP_CFLAGS) -DINIT 
- 
- # TESTING option for CFLAGS
- # CFLAGS := -DTESTING $(CFLAGS)
- 
- ifeq ($(strip $(CC)), gcc)
--CFLAGS := -O3 -Wall -DGCC $(CFLAGS)
-+CFLAGS := -Wall -DGCC $(CFLAGS)
- endif
- ifeq ($(strip $(CC)), pgcc)
- CFLAGS := -fast $(CFLAGS)
-@@ -115,7 +115,7 @@
- RELBASE   = GRAPPA
- RELNAME   = $(RELBASE)-$(VERS_MAJ).$(VERS_MIN)
- 
--LIBS 		:= -lm -lc -lpthread 
-+LIBS 		:= -lm -pthread 
- # added this part to the end of above "-l mpi"
- ifeq ($(OS), SunOS)
- LIBS		:= -liberty -lsocket -lposix4 -lnsl ${LIBS}
-@@ -154,12 +154,6 @@
- 	$(RM) -fr $(RELNAME)
- 	$(LS) -l $(RELNAME).tar.gz
- 
--$(RELNAME)/%.c : %.c
--	-$(CP) $< $(RELNAME)/.
--
--$(RELNAME)/%.h : %.h
--	-$(CP) $< $(RELNAME)/.
--
- clean:
- 	-rm -f *.${OBJ_SUFFIX} *~ ${EXEC} ${EXEC}.${EXE_SUFFIX} ${SYM} \
- 	       core gmon.out
diff --git a/biology/grappa/pkg-descr b/biology/grappa/pkg-descr
deleted file mode 100644
index a9e297e44e58..000000000000
--- a/biology/grappa/pkg-descr
+++ /dev/null
@@ -1,17 +0,0 @@
-GRAPPA: Genome Rearrangements Analysis under Parsimony and other
-Phylogenetic Algorithms
-
-This suite of programs implements the approach to phylogeny
-reconstruction from gene orders described in the paper
-   Moret, B.M.E., Wyman, S., Bader, D.A., Warnow, T., and Yan, M.,
-   ``A detailed study of breakpoint analysis,''
-   Proc. 6th Pacific Symp. Biocomputing PSB 2001, Hawaii (2001).
-In its current state, "grappa" allows one to explore either the
-space of all possible trees on n labelled leaves or the space of all
-such trees that obey (are refinements of) a particular constraint tree.
-
-"invdist" takes the first two genomes in the input file and returns
-their inversion distance.
-"distmat" prints the inversion and breakpoint distance matrices.
-
-WWW: http://www.cs.unm.edu/~moret/GRAPPA/
diff --git a/biology/lagan/Makefile b/biology/lagan/Makefile
deleted file mode 100644
index 175574e28587..000000000000
--- a/biology/lagan/Makefile
+++ /dev/null
@@ -1,76 +0,0 @@
-# Created by: Fernan Aguero <fernan@iib.unsam.edu.ar>
-
-PORTNAME=	lagan
-PORTVERSION=	2.0
-PORTREVISION=	2
-CATEGORIES=	biology
-MASTER_SITES=	http://lagan.stanford.edu/lagan_web/
-DISTNAME=	${PORTNAME}${PORTVERSION:S/.//}
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Efficient tools for large-scale multiple alignments of genomic DNA
-
-LICENSE=	GPLv2
-
-USES=		perl5 shebangfix
-USE_PERL5=	run
-SHEBANG_FILES=	slagan.pl
-MAKE_JOBS_UNSAFE=yes
-
-CFLAGS+=		-fcommon
-
-DEPRECATED=	Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
-EXPIRATION_DATE=2021-04-01
-
-SUB_FILES=	pkg-message
-SUB_LIST=	LAGAN_DIR="${LAGAN_DIR}"
-
-PLIST_FILES=	${EXECUTABLES:S,^,${PORTNAME}/,} \
-		${SCRIPTS:S,^,${PORTNAME}/,} \
-		${EXEUTILS:S,^,${PORTNAME}/utils/,} \
-		${SCRIPTUTILS:S,^,${PORTNAME}/utils/,} \
-		${READMES:S,^,${PORTNAME}/Readmes/,}
-
-LAGAN_DIR=	${PREFIX}/${PORTNAME}
-
-EXECUTABLES=	anchors chaos glocal mlagan order
-SCRIPTS=	anal_gloc.pl lagan.pl rechaos.pl slagan.pl
-EXEUTILS=	Glue bin2bl bin2mf cextract contigorder cstat dotplot fa2xfa \
-		getbounds getcontigpos getlength getoverlap rc scorealign \
-		scorecontigs seqmerge
-SCRIPTUTILS=	cmerge2.pl draft.pl mextract.pl mf2bin.pl mpretty.pl \
-		mproject.pl mrun.pl mrunfile.pl mrunpairs.pl mviz.pl
-READMES=	README.FIRST README.chaos README.lagan README.mlagan \
-		README.tools README.shuffle
-
-post-patch:
-	@${FIND} ${WRKSRC} -name "Makefile" | ${XARGS} ${REINPLACE_CMD} -e \
-		'/^CC/s|^|#| ; \
-		 /^CFLAGS/s|^|#| ; \
-		 s|$$(CC) -o|$$(CC) $$(CFLAGS) -o| ; \
-		 s|$$(CPP) -o|$$(CXX) $$(CXXFLAGS) -o| ; \
-		 s|$$(CLINKER) $$(OPTFLAGS)|$$(CXX) $$(LDFLAGS)|'
-	@${FIND} ${WRKSRC}/src -name "*.c" | ${XARGS} ${REINPLACE_CMD} -e \
-		's|^inline |static inline |'
-
-do-install:
-	@${MKDIR} ${STAGEDIR}${LAGAN_DIR}
-.for exe in ${EXECUTABLES}
-	${INSTALL_PROGRAM} ${WRKSRC}/${exe} ${STAGEDIR}${LAGAN_DIR}
-.endfor
-.for script in ${SCRIPTS}
-	${INSTALL_SCRIPT} ${WRKSRC}/${script} ${STAGEDIR}${LAGAN_DIR}
-.endfor
-	@${MKDIR} ${STAGEDIR}${LAGAN_DIR}/utils
-.for exeutil in ${EXEUTILS}
-	${INSTALL_PROGRAM} ${WRKSRC}/utils/${exeutil} ${STAGEDIR}${LAGAN_DIR}/utils
-.endfor
-.for scriptutil in ${SCRIPTUTILS}
-	${INSTALL_SCRIPT} ${WRKSRC}/utils/${scriptutil} ${STAGEDIR}${LAGAN_DIR}/utils
-.endfor
-	@${MKDIR} ${STAGEDIR}${LAGAN_DIR}/Readmes
-.for readme in ${READMES}
-	${INSTALL_DATA} ${WRKSRC}/Readmes/${readme} ${STAGEDIR}${LAGAN_DIR}/Readmes
-.endfor
-
-.include <bsd.port.mk>
diff --git a/biology/lagan/distinfo b/biology/lagan/distinfo
deleted file mode 100644
index ca3f96cf5715..000000000000
--- a/biology/lagan/distinfo
+++ /dev/null
@@ -1,2 +0,0 @@
-SHA256 (lagan20.tar.gz) = a65e61ed4fd6608f4e5ad5b11a1b77f4fec1a207d822c5885b3e86727496e1fe
-SIZE (lagan20.tar.gz) = 589115
diff --git a/biology/lagan/files/patch-src__glocal__rightinfluence.cpp b/biology/lagan/files/patch-src__glocal__rightinfluence.cpp
deleted file mode 100644
index dd8edd2e0350..000000000000
--- a/biology/lagan/files/patch-src__glocal__rightinfluence.cpp
+++ /dev/null
@@ -1,33 +0,0 @@
---- src/glocal/rightinfluence.cpp.orig	2006-09-14 20:40:19 UTC
-+++ src/glocal/rightinfluence.cpp
-@@ -1,6 +1,6 @@
- #include <rightinfluence.h>
- 
--Fragment origin, end;
-+Fragment origin, my_end;
- 
- // Sets the first default owner of the whole region
- void initRI(RI *RightInfluence, long long int scoreIndex) {
-@@ -18,17 +18,17 @@ void initRI(RI *RightInfluence, long lon
- 
- 	// hack to aid winner selection
- 	origin.score = -1;
--	end.score = -2;
--	origin.totalScore = end.totalScore = 0;
-+	my_end.score = -2;
-+	origin.totalScore = my_end.totalScore = 0;
- 
- 	// will win against anyone
--	end.seq1End = 0; end.seq2End = 0;
--	end.seq1Start = 0; end.seq2Start = 0;
-+	my_end.seq1End = 0; my_end.seq2End = 0;
-+	my_end.seq1Start = 0; my_end.seq2Start = 0;
- 
- 	origin.back = NULL;
- 
-     RightInfluence->act[-INF] = &origin;
--    RightInfluence->act[+INF] = &end;
-+    RightInfluence->act[+INF] = &my_end;
- }
- 
- 
diff --git a/biology/lagan/files/patch-src__glocal__score.cpp b/biology/lagan/files/patch-src__glocal__score.cpp
deleted file mode 100644
index 0360397cacbc..000000000000
--- a/biology/lagan/files/patch-src__glocal__score.cpp
+++ /dev/null
@@ -1,11 +0,0 @@
---- src/glocal/score.cpp.orig	2006-09-14 20:40:19 UTC
-+++ src/glocal/score.cpp
-@@ -2,7 +2,7 @@
- #include<score.h>
- #include<leftinfluence.h>
- #include<rightinfluence.h>
--#include<fstream.h>
-+#include<fstream>
- 
- extern vector<class Score*> scoreFunctions[1<<(UPSTRANDBITS+DOWNSTRANDBITS+RELPOSBITS)];
- 
diff --git a/biology/lagan/files/patch-src__utils__Glue.cpp b/biology/lagan/files/patch-src__utils__Glue.cpp
deleted file mode 100644
index bce5c336a1aa..000000000000
--- a/biology/lagan/files/patch-src__utils__Glue.cpp
+++ /dev/null
@@ -1,10 +0,0 @@
---- src/utils/Glue.cpp.orig	2006-09-14 20:40:18 UTC
-+++ src/utils/Glue.cpp
-@@ -6,6 +6,7 @@
- #include <fstream>
- #include <iostream>
- #include <algorithm>
-+#include <cstring>
- 
- #define NUCLEOTIDE_MATRIX_FILE "nucmatrix.txt"
- #define MAX_LINE_LENGTH 1024
diff --git a/biology/lagan/files/patch-src_anchors.c b/biology/lagan/files/patch-src_anchors.c
deleted file mode 100644
index 00b9f66ac060..000000000000
--- a/biology/lagan/files/patch-src_anchors.c
+++ /dev/null
@@ -1,20 +0,0 @@
---- src/anchors.c.orig	2016-05-11 21:46:55 UTC
-+++ src/anchors.c
-@@ -225,7 +225,7 @@ char* rolltonum(char* str) {
-   return &str[i];
- }
- 
--int getline(FILE* infile, hll* tt) {
-+int get_line(FILE* infile, hll* tt) {
-   char temp[1024];
-   char* help;
-   int z, h;
-@@ -248,7 +248,7 @@ hll* parseCHAOS(FILE* infile, int* totnu
-   *totnum = 0;
-   while(!feof(infile)) {
-     tt = (hll*) malloc(sizeof(hll));
--    while (!feof(infile) && !getline(infile, tt))
-+    while (!feof(infile) && !get_line(infile, tt))
-       ;
-     if (feof(infile)) break;
-     if (gapfreechunks) {
diff --git a/biology/lagan/files/pkg-message.in b/biology/lagan/files/pkg-message.in
deleted file mode 100644
index 3036d2556840..000000000000
--- a/biology/lagan/files/pkg-message.in
+++ /dev/null
@@ -1,11 +0,0 @@
-[
-{ type: install
-  message: <<EOM
- All the executables, scripts, Readmes and utilities were installed
- under %%LAGAN_DIR%%
-
- Add this to your PATH and set the environment variable
- LAGAN_DIR to point to this directory.
-EOM
-}
-]
diff --git a/biology/lagan/pkg-descr b/biology/lagan/pkg-descr
deleted file mode 100644
index b7dd5e856977..000000000000
--- a/biology/lagan/pkg-descr
+++ /dev/null
@@ -1,9 +0,0 @@
-The Lagan Tookit is a set of alignment programs for comparative
-genomics. The three main components are a pairwise aligner (LAGAN), a
-multiple aligner (M-LAGAN), and a glocal aligner (Shuffle-LAGAN). All
-three are based on the CHAOS local alignment tool and combine speed
-(regions up to several megabases can be aligned in minutes) with high
-accuracy. The results of the alignment can be visualized using the VISTA
-visualization tool.
-
-WWW: http://lagan.stanford.edu/
diff --git a/biology/phylip/Makefile b/biology/phylip/Makefile
deleted file mode 100644
index a26e625e2c1b..000000000000
--- a/biology/phylip/Makefile
+++ /dev/null
@@ -1,54 +0,0 @@
-# Created by: David A. Bader <dbader@eece.unm.edu>
-
-PORTNAME=	phylip
-PORTVERSION=	3.697
-PORTREVISION=	1
-PORTEPOCH=	1
-CATEGORIES=	biology
-MASTER_SITES=	http://evolution.gs.washington.edu/phylip/download/
-
-MAINTAINER=	ports@FreeBSD.org
-COMMENT=	Phylogeny Inference Package
-
-LICENSE=	BSD2CLAUSE
-LICENSE_FILE=	${WRKSRC}/src/COPYRIGHT
-
-BUILD_DEPENDS=	bash:shells/bash
-
-BUILD_WRKSRC=	${WRKSRC}/src
-INSTALL_WRKSRC=	${WRKSRC}/src
-
-USES=		gmake xorg
-USE_XORG=	x11 xaw xt
-MAKEFILE=	Makefile.unx
-MAKE_ARGS=	CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \
-		DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \
-		DLIBS="-L${LOCALBASE}/lib -lX11 -lXaw -lXt -lm"
-USE_LDCONFIG=	yes
-
-CFLAGS+=		-fcommon
-
-DEPRECATED=	Unmaintained and dead upstream, does not build with -fno-common (llvm 11)
-EXPIRATION_DATE=2021-04-01
-
-PORTDOCS=	*
-
-OPTIONS_DEFINE=	DOCS
-
-post-install:
-	@cd ${WRKSRC}/exe && \
-		${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \
-		-not -name '*.unx' -not -name 'font*' -not -name '*.so' \
-		| ${XARGS} -J % ${INSTALL_PROGRAM} % ${STAGEDIR}${PREFIX}/bin
-	@cd ${WRKSRC}/exe && \
-		${FIND} . -maxdepth 1 -not -type d -name "*.so" \
-		| ${XARGS} -J % ${INSTALL_LIB} % ${STAGEDIR}${PREFIX}/lib
-	@${MKDIR} ${STAGEDIR}${DATADIR}
-	@cd ${WRKSRC}/exe && \
-		${FIND} . -maxdepth 1 -not -type d -name 'font*' \
-		| ${XARGS} -J % ${INSTALL_DATA} % ${STAGEDIR}${DATADIR}
-	@${MKDIR} ${STAGEDIR}${DOCSDIR}
-	@(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . \
-		${STAGEDIR}${DOCSDIR})
-
-.include <bsd.port.mk>
diff --git a/biology/phylip/distinfo b/biology/phylip/distinfo
deleted file mode 100644
index c328b3902616..000000000000
--- a/biology/phylip/distinfo
+++ /dev/null
@@ -1,3 +0,0 @@
-TIMESTAMP = 1514795118
-SHA256 (phylip-3.697.tar.gz) = 9a26d8b08b8afea7f708509ef41df484003101eaf4beceb5cf7851eb940510c1
-SIZE (phylip-3.697.tar.gz) = 3958696
diff --git a/biology/phylip/pkg-descr b/biology/phylip/pkg-descr
deleted file mode 100644
index c6e1dd95c0a2..000000000000
--- a/biology/phylip/pkg-descr
+++ /dev/null
@@ -1,8 +0,0 @@
-PHYLIP (the PHYLogeny Inference Package) is a package of programs for
-inferring phylogenies (evolutionary trees). Methods that are available
-in the package include parsimony, distance matrix, and likelihood
-methods, including bootstrapping and consensus trees. Data types that
-can be handled include molecular sequences, gene frequencies,
-restriction sites, distance matrices, and 0/1 discrete characters.
-
-WWW: http://evolution.genetics.washington.edu/phylip.html
diff --git a/biology/phylip/pkg-plist b/biology/phylip/pkg-plist
deleted file mode 100644
index b5c9253a9b56..000000000000
--- a/biology/phylip/pkg-plist
+++ /dev/null
@@ -1,43 +0,0 @@
-bin/clique
-bin/consense
-bin/contml
-bin/contrast
-bin/dnacomp
-bin/dnadist
-bin/dnainvar
-bin/dnaml
-bin/dnamlk
-bin/dnamove
-bin/dnapars
-bin/dnapenny
-bin/dollop
-bin/dolmove
-bin/dolpenny
-bin/drawgram
-bin/drawtree
-bin/factor
-bin/fitch
-bin/gendist
-bin/kitsch
-bin/mix
-bin/move
-bin/neighbor
-bin/pars
-bin/penny
-bin/proml
-bin/promlk
-bin/protdist
-bin/protpars
-bin/restdist
-bin/restml
-bin/retree
-bin/seqboot
-bin/treedist
-lib/libdrawgram.so
-lib/libdrawtree.so
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