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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-07-02 17:00:29 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-07-02 17:00:29 +0000 |
| commit | 7fd4d4420f371474514cdb696d120e069b11ec21 (patch) | |
| tree | 22a35a9ca12b9726c223a018e6ea4893760ee8c4 /biology | |
| parent | e35c0e08648a793d99d8159c2dbcc80f9b6bf23d (diff) | |
| download | ports-7fd4d4420f371474514cdb696d120e069b11ec21.tar.gz ports-7fd4d4420f371474514cdb696d120e069b11ec21.zip | |
biology/py-goatools: Tools for processing and visualizing Gene Ontology terms
Goatools is a python library for processing Gene Ontology (GO) terms. It
includes routines for processing, filtering, and visualizing GO data.
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/py-goatools/Makefile | 29 | ||||
| -rw-r--r-- | biology/py-goatools/distinfo | 3 | ||||
| -rw-r--r-- | biology/py-goatools/pkg-descr | 4 |
4 files changed, 37 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 55ed6b8c2735..f02dc903a129 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -137,6 +137,7 @@ SUBDIR += py-dnaio SUBDIR += py-ete3 SUBDIR += py-gffutils + SUBDIR += py-goatools SUBDIR += py-gtfparse SUBDIR += py-hits SUBDIR += py-loompy diff --git a/biology/py-goatools/Makefile b/biology/py-goatools/Makefile new file mode 100644 index 000000000000..c2b222f46835 --- /dev/null +++ b/biology/py-goatools/Makefile @@ -0,0 +1,29 @@ +PORTNAME= goatools +DISTVERSION= 1.1.6 +CATEGORIES= biology python +MASTER_SITES= CHEESESHOP +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Tools for processing and visualizing Gene Ontology terms + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +# xlrd should be == 1.2.0 +RUN_DEPENDS= ${PKGNAMEPREFIX}pandas>0:math/py-pandas@${PY_FLAVOR} \ + ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}scipy>0:science/py-scipy@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}XlsxWriter>0:textproc/py-xlsxwriter@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}statsmodels>0:math/py-statsmodels@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}xlrd>0:textproc/py-xlrd@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}docopt>0:devel/py-docopt@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pydot>0:graphics/py-pydot@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}requests>0:www/py-requests@${PY_FLAVOR} \ + ${PYTHON_PKGNAMEPREFIX}pygraphviz>0:graphics/py-pygraphviz@${PY_FLAVOR} \ + wget>0:ftp/wget + +USES= python:3.6+ +USE_PYTHON= autoplist distutils + +.include <bsd.port.mk> diff --git a/biology/py-goatools/distinfo b/biology/py-goatools/distinfo new file mode 100644 index 000000000000..cdadbfe66214 --- /dev/null +++ b/biology/py-goatools/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1625181597 +SHA256 (goatools-1.1.6.tar.gz) = b631a6a803818673ac815ed5f1e7158d1bd98a3ce5c93b64961dc73bdea56bca +SIZE (goatools-1.1.6.tar.gz) = 15098351 diff --git a/biology/py-goatools/pkg-descr b/biology/py-goatools/pkg-descr new file mode 100644 index 000000000000..d35285e6132e --- /dev/null +++ b/biology/py-goatools/pkg-descr @@ -0,0 +1,4 @@ +Goatools is a python library for processing Gene Ontology (GO) terms. It +includes routines for processing, filtering, and visualizing GO data. + +WWW: https://pypi.python.org/pypi/goatools |