diff options
| author | Maho Nakata <maho@FreeBSD.org> | 2010-09-16 21:48:04 +0000 |
|---|---|---|
| committer | Maho Nakata <maho@FreeBSD.org> | 2010-09-16 21:48:04 +0000 |
| commit | 893f4b14c03b827197b2381c1aecff3df081f8f6 (patch) | |
| tree | 1e7b892e98850bde17c14c415e1689ce00f7d8df /biology | |
| parent | cb4f661ae0c70711917344631f0fa0ac1cc372c3 (diff) | |
| download | ports-893f4b14c03b827197b2381c1aecff3df081f8f6.tar.gz ports-893f4b14c03b827197b2381c1aecff3df081f8f6.zip | |
Notes
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/pymol/Makefile | 16 | ||||
| -rw-r--r-- | biology/pymol/distinfo | 6 | ||||
| -rw-r--r-- | biology/pymol/files/patch-setup.py | 38 | ||||
| -rw-r--r-- | biology/pymol/pkg-plist | 1275 |
4 files changed, 699 insertions, 636 deletions
diff --git a/biology/pymol/Makefile b/biology/pymol/Makefile index c15d04dbfa3b..665e0d1dde2b 100644 --- a/biology/pymol/Makefile +++ b/biology/pymol/Makefile @@ -5,8 +5,7 @@ # $FreeBSD$ PORTNAME= pymol -PORTVERSION= 1.0r2 -PORTREVISION= 5 +PORTVERSION= ${VERSION}.${SVNREVISION} CATEGORIES= biology python MASTER_SITES= ${MASTER_SITE_LOCAL:S|%SUBDIR%|maho/pymol|} @@ -19,6 +18,10 @@ RUN_DEPENDS= ${PYNUMERIC} \ LIB_DEPENDS= png.6:${PORTSDIR}/graphics/png \ freetype.9:${PORTSDIR}/print/freetype2 +VERSION= 1.3r1 +SVNREVISION= 3913 + +USE_BZIP2= yes WRKSRC= ${WRKDIR}/pymol-${PORTVERSION} USE_GL= glut USE_GMAKE= yes @@ -36,4 +39,13 @@ do-install: ; ${SETENV} ${MAKE_ENV} ${PYTHON_CMD} setup2.py install) @${INSTALL_SCRIPT} ${WRKSRC}/pymol ${PREFIX}/bin/pymol +#maintainance +do-fetch-svn: + #svn ls https://pymol.svn.sourceforge.net/svnroot/pymol/tags + #http://pymol.svn.sourceforge.net/viewvc/pymol/trunk/ + ${RM} -rf pymol-${VERSION}.${SVNREVISION} + svn -r ${SVNREVISION} export https://pymol.svn.sourceforge.net/svnroot/pymol/trunk/pymol pymol-${VERSION}.${SVNREVISION} + tar cvfj pymol-${VERSION}.${SVNREVISION}.tar.bz2 pymol-${VERSION}.${SVNREVISION} + scp pymol-${VERSION}.${SVNREVISION}.tar.bz2 freefall.freebsd.org:public_distfiles/pymol/ + .include <bsd.port.mk> diff --git a/biology/pymol/distinfo b/biology/pymol/distinfo index 5bf879c618ae..4885db859fdf 100644 --- a/biology/pymol/distinfo +++ b/biology/pymol/distinfo @@ -1,3 +1,3 @@ -MD5 (pymol-1.0r2.tar.gz) = 196bd9a8f7de6e7c9e77eacd463ce140 -SHA256 (pymol-1.0r2.tar.gz) = 876d1422c4fd9a8bb792ac38e960afb4cc59b54e0e0d26bf44daaeaff122b16f -SIZE (pymol-1.0r2.tar.gz) = 7636761 +MD5 (pymol-1.3r1.3913.tar.bz2) = 585fd44cfc548afea855fdb786fbeb26 +SHA256 (pymol-1.3r1.3913.tar.bz2) = 32b1995d6c87d35b71fe5025e81e9b68b0d96d60825d8aac33685e70d73e8d87 +SIZE (pymol-1.3r1.3913.tar.bz2) = 6967557 diff --git a/biology/pymol/files/patch-setup.py b/biology/pymol/files/patch-setup.py index 08bb35418fee..d81c647b7d31 100644 --- a/biology/pymol/files/patch-setup.py +++ b/biology/pymol/files/patch-setup.py @@ -1,19 +1,21 @@ ---- setup.py.orig 2007-07-03 07:11:15.000000000 +0900 -+++ setup.py 2008-03-06 17:59:33.000000000 +0900 -@@ -88,6 +88,8 @@ - "layer0","layer1","layer2", - "layer3","layer4","layer5", - "/usr/include/freetype2", -+ "%%LOCALBASE%%/include", -+ "%%LOCALBASE%%/include/freetype2", - # "/users/warren/ext/include", +--- setup.py.bak 2010-09-16 10:45:18.000000000 +0900 ++++ setup.py 2010-09-16 10:51:57.000000000 +0900 +@@ -127,7 +127,8 @@ + inc_dirs=["ov/src", + "layer0","layer1","layer2", + "layer3","layer4","layer5", +- "/usr/include/freetype2", ++ "%%LOCALBASE%%/include", ++ "%%LOCALBASE%%/include/freetype2", + # "/users/warren/ext/include", # VMD plugin support - # "contrib/uiuc/plugins/include", -@@ -98,6 +100,7 @@ - pyogl_libs = ["GL","GLU","glut"] - lib_dirs=[ - "/usr/X11R6/lib", -+ "%%LOCALBASE%%/lib", - # "/users/warren/pymol/ext/lib" - ] - def_macros=[("_PYMOL_MODULE",None), + # "contrib/uiuc/plugins/include", +@@ -139,7 +140,7 @@ + ] + pyogl_libs = ["GL","GLU","glut"] + lib_dirs=[ +- "/usr/X11R6/lib", ++ "%%LOCALBASE%%/lib", + # "/users/warren/pymol/ext/lib" + ] + def_macros=[("_PYMOL_MODULE",None), diff --git a/biology/pymol/pkg-plist b/biology/pymol/pkg-plist index c3075955864a..8d8509e8bf8c 100644 --- a/biology/pymol/pkg-plist +++ b/biology/pymol/pkg-plist @@ -1,706 +1,754 @@ bin/pymol -%%PYTHON_SITELIBDIR%%/pymol/experimenting.py -%%PYTHON_SITELIBDIR%%/pymol/wizarding.py -%%PYTHON_SITELIBDIR%%/pymol/creating.py +%%PYTHON_SITELIBDIR%%/chempy/__init__.py +%%PYTHON_SITELIBDIR%%/chempy/__init__.pyc +%%PYTHON_SITELIBDIR%%/chempy/arc.py +%%PYTHON_SITELIBDIR%%/chempy/arc.pyc +%%PYTHON_SITELIBDIR%%/chempy/bmin/__init__.py +%%PYTHON_SITELIBDIR%%/chempy/bmin/__init__.pyc +%%PYTHON_SITELIBDIR%%/chempy/bmin/commands.py +%%PYTHON_SITELIBDIR%%/chempy/bmin/commands.pyc +%%PYTHON_SITELIBDIR%%/chempy/bmin/realtime.py +%%PYTHON_SITELIBDIR%%/chempy/bmin/realtime.pyc +%%PYTHON_SITELIBDIR%%/chempy/bmin/state.py +%%PYTHON_SITELIBDIR%%/chempy/bmin/state.pyc +%%PYTHON_SITELIBDIR%%/chempy/bmin/util.py +%%PYTHON_SITELIBDIR%%/chempy/bmin/util.pyc +%%PYTHON_SITELIBDIR%%/chempy/bond_amber.py +%%PYTHON_SITELIBDIR%%/chempy/bond_amber.pyc +%%PYTHON_SITELIBDIR%%/chempy/bond_mmff.py +%%PYTHON_SITELIBDIR%%/chempy/bond_mmff.pyc +%%PYTHON_SITELIBDIR%%/chempy/bonds.py +%%PYTHON_SITELIBDIR%%/chempy/bonds.pyc +%%PYTHON_SITELIBDIR%%/chempy/brick.py +%%PYTHON_SITELIBDIR%%/chempy/brick.pyc +%%PYTHON_SITELIBDIR%%/chempy/cc1.py +%%PYTHON_SITELIBDIR%%/chempy/cc1.pyc +%%PYTHON_SITELIBDIR%%/chempy/cex.py +%%PYTHON_SITELIBDIR%%/chempy/cex.pyc +%%PYTHON_SITELIBDIR%%/chempy/champ/__init__.py +%%PYTHON_SITELIBDIR%%/chempy/champ/__init__.pyc +%%PYTHON_SITELIBDIR%%/chempy/champ/_champ.so +%%PYTHON_SITELIBDIR%%/chempy/champ/amber99.py +%%PYTHON_SITELIBDIR%%/chempy/champ/amber99.pyc +%%PYTHON_SITELIBDIR%%/chempy/champ/assign.py +%%PYTHON_SITELIBDIR%%/chempy/champ/assign.pyc 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