diff options
| author | Joseph Mingrone <jrm@FreeBSD.org> | 2023-08-09 15:23:50 +0000 |
|---|---|---|
| committer | Joseph Mingrone <jrm@FreeBSD.org> | 2023-08-09 17:39:17 +0000 |
| commit | 8d0b7976cd078892b48202aa8acc0810135bf02a (patch) | |
| tree | b52a338964e3a6bcfcb2c38d5129459ca6ac0f43 /biology | |
| parent | 3ec047b85b8db5676b74788a182ecd530bc32938 (diff) | |
| download | ports-8d0b7976cd078892b48202aa8acc0810135bf02a.tar.gz ports-8d0b7976cd078892b48202aa8acc0810135bf02a.zip | |
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/hyphy/Makefile | 6 | ||||
| -rw-r--r-- | biology/hyphy/distinfo | 6 | ||||
| -rw-r--r-- | biology/hyphy/files/patch-src_core_include_likefunc.h | 12 | ||||
| -rw-r--r-- | biology/hyphy/pkg-plist | 1 |
4 files changed, 6 insertions, 19 deletions
diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index 68438851d8b7..2ac2c78ea0c5 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,5 +1,5 @@ PORTNAME= hyphy -DISTVERSION= 2.5.51hf +DISTVERSION= 2.5.52 CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org @@ -9,7 +9,7 @@ WWW= https://www.hyphy.org/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE -ONLY_FOR_ARCHS= aarch64 amd64 armv7 i386 powerpc powerpc64 powerpc64le +ONLY_FOR_ARCHS= aarch64 amd64 i386 powerpc powerpc64 powerpc64le LIB_DEPENDS= libcurl.so:ftp/curl TEST_DEPENDS= bash:shells/bash @@ -24,6 +24,4 @@ AVX_DESC= Advanced vector extensions support AVX_CMAKE_OFF= -DNOAVX:BOOL=ON -# FEL test is failing. See https://github.com/veg/hyphy/issues/1585 - .include <bsd.port.mk> diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo index 8a097550734b..d0aac6efd8a0 100644 --- a/biology/hyphy/distinfo +++ b/biology/hyphy/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1685303680 -SHA256 (veg-hyphy-2.5.51hf_GH0.tar.gz) = 403a5d07a4e7e67d3d8136fa83649713ad28223a2519e5fba3aa82697a03375f -SIZE (veg-hyphy-2.5.51hf_GH0.tar.gz) = 5620954 +TIMESTAMP = 1691588992 +SHA256 (veg-hyphy-2.5.52_GH0.tar.gz) = 9e57d7af4a2bb765c48e4eccd025f22a64b692e8951f258e7b9134f7bd8bffed +SIZE (veg-hyphy-2.5.52_GH0.tar.gz) = 5633837 diff --git a/biology/hyphy/files/patch-src_core_include_likefunc.h b/biology/hyphy/files/patch-src_core_include_likefunc.h deleted file mode 100644 index bd2ab76cc7cb..000000000000 --- a/biology/hyphy/files/patch-src_core_include_likefunc.h +++ /dev/null @@ -1,12 +0,0 @@ ---- src/core/include/likefunc.h.orig 2023-06-27 12:50:39 UTC -+++ src/core/include/likefunc.h -@@ -282,9 +282,6 @@ class _LikelihoodFunction: public BaseObj { (public) - long GetThreadCount (void) { - return 1L; - } -- void SetThreadCount (long) { -- -- } - #endif - #endif - diff --git a/biology/hyphy/pkg-plist b/biology/hyphy/pkg-plist index 6636b69c97e8..9f46ee3e53d6 100644 --- a/biology/hyphy/pkg-plist +++ b/biology/hyphy/pkg-plist @@ -190,6 +190,7 @@ bin/hyphy %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/SingleOmega.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf +%%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/contrast-meme.bf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/grid_compute.ibf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/io_functions.ibf %%DATADIR%%/TemplateBatchFiles/SelectionAnalyses/modules/selection_lib.ibf |