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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2021-04-18 20:12:46 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2021-04-18 20:19:56 +0000 |
| commit | 8e65beb783c9abf477fa85e8437600b6890d94b8 (patch) | |
| tree | 4bc805dc553a5c66bdc419ca0cb81019dbfd9823 /biology | |
| parent | 3484bcc34aa95e82e362e699dc01865792b3631e (diff) | |
| download | ports-8e65beb783c9abf477fa85e8437600b6890d94b8.tar.gz ports-8e65beb783c9abf477fa85e8437600b6890d94b8.zip | |
biology/abyss: Update 2.2.5 -> 2.3.0-3
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/abyss/Makefile | 10 | ||||
| -rw-r--r-- | biology/abyss/distinfo | 6 | ||||
| -rw-r--r-- | biology/abyss/pkg-plist | 1 |
3 files changed, 11 insertions, 6 deletions
diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile index 5f73249d04b0..89eefc25ee1e 100644 --- a/biology/abyss/Makefile +++ b/biology/abyss/Makefile @@ -1,5 +1,6 @@ PORTNAME= abyss -DISTVERSION= 2.2.5 +DISTVERSION= 2.3.0-3 +DISTVERSIONSUFFIX= -g25f5f66f CATEGORIES= biology MAINTAINER= yuri@FreeBSD.org @@ -19,12 +20,15 @@ RUN_DEPENDS= bash:shells/bash \ gmake:devel/gmake USES= autoreconf compiler:c++11-lang gmake iconv:wchar_t localbase:ldflags shebangfix sqlite + +USE_GITHUB= yes +GH_ACCOUNT= bcgsc + SHEBANG_FILES= bin/${PORTNAME}-* DataBase/abyss-db-txt SHEBANG_LANG= make make_OLD_CMD= /usr/bin/make make_CMD= ${PREFIX}/bin/gmake -USE_GITHUB= yes -GH_ACCOUNT= bcgsc + GNU_CONFIGURE= yes CONFIGURE_ARGS= --without-sparsehash # configure fails to find std::hash, reported to the ML: https://groups.google.com/forum/#!topic/trans-abyss/SZDBKR5bKxs diff --git a/biology/abyss/distinfo b/biology/abyss/distinfo index a4623713ff5c..a02b1ba59ee9 100644 --- a/biology/abyss/distinfo +++ b/biology/abyss/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1601189184 -SHA256 (bcgsc-abyss-2.2.5_GH0.tar.gz) = 1b85e1fdfb49f1ed4e00201cc55e9ccec93f812335104751bbf24b46e1264453 -SIZE (bcgsc-abyss-2.2.5_GH0.tar.gz) = 1698962 +TIMESTAMP = 1618769259 +SHA256 (bcgsc-abyss-2.3.0-3-g25f5f66f_GH0.tar.gz) = 6345363ad02480f019816eb02ee80a8683ef32415ff756f48c89b02d0c38f8e3 +SIZE (bcgsc-abyss-2.3.0-3-g25f5f66f_GH0.tar.gz) = 1531834 diff --git a/biology/abyss/pkg-plist b/biology/abyss/pkg-plist index 9d33e624fff7..3e2d8eba7135 100644 --- a/biology/abyss/pkg-plist +++ b/biology/abyss/pkg-plist @@ -44,6 +44,7 @@ bin/abyss-mergepairs bin/abyss-overlap bin/abyss-paired-dbg bin/abyss-pe +bin/abyss-rresolver-short bin/abyss-samtoafg bin/abyss-scaffold bin/abyss-sealer |