11 files changed, 0 insertions, 820 deletions

diff --git a/biology/gaussian98/Makefile b/biology/gaussian98/Makefile
deleted file mode 100644
index 3a8b3cb98899..000000000000
--- a/biology/gaussian98/Makefile
+++ /dev/null
@@ -1,72 +0,0 @@
-# New ports collection makefile for:	gaussian98
-# Date created:		Feb 10 2001
-# Whom:			NAKATA, Maho <chat95@mbox.kyoto-inet.or.jp>
-#
-# $FreeBSD$
-#
-
-PORTNAME=	gaussian98
-PORTVERSION=	1.0.7
-CATEGORIES=	biology
-MASTER_SITES=	file:${CD_MOUNTPT}/TAR/
-DISTNAME=	WKSSRC
-EXTRACT_SUFX=	.TAR
-
-MAINTAINER=	chat95@mbox.kyoto-inet.or.jp
-
-LIB_DEPENDS=	blas:${PORTSDIR}/math/blas
-
-USE_GMAKE=	yes
-INSTALLS_SHLIB=	yes
-WRKSRC=		${WRKDIR}/g98
-
-NO_CDROM=	"You must purchase a licensed copy from Gaussian inc."
-NO_PACKAGE=	"You must purchase a licensed copy from Gaussian inc."
-RESTRICTED=	"You must purchase a licensed copy from Gaussian inc."
-
-.include <bsd.port.pre.mk>
-
-.if ${OSVERSION} < 400013
-F77?=		g77
-.else
-F77?=		f77
-.endif
-
-post-extract:
-	${RM} ${DISTDIR}/${DISTFILES}
-
-post-patch:
-	@${SED} -e s+@PREFIX@+${PREFIX}+ ${FILESDIR}/gaussian98  > ${WRKSRC}/gaussian98
-	@${ECHO} "You can override and FFLAGS on the command line."
-	@${ECHO} "Following is an recommended one."
-	@${ECHO} "make FFLAGS=\"-malign-double -fexpensive-optimizations -O4 -ffast-math -funroll-loops\""
-
-MAKE_ENV=	"GMAKE=${GMAKE} F77=${F77} PREFIX=${PREFIX}"
-
-do-build:
-	(cd ${WRKSRC}; ${SETENV} ${MAKE_ENV} csh ./bsd/bldg98)
-
-do-install:
-	@${MKDIR} ${PREFIX}/bin/g98/bsd \
-	 	  ${PREFIX}/share/gaussian98/explore/examples \
-	 	  ${PREFIX}/share/gaussian98/explore/exercise \
-		  ${PREFIX}/share/gaussian98/explore/quick
-	@(cd ${WRKSRC}/bsd; \
-	  ${INSTALL_SCRIPT} gau-unlimit set-mflags g98.login \
-		${PREFIX}/bin/g98/bsd; \
-	  cd ${WRKSRC}; \
-	  ${INSTALL_PROGRAM} gauopt ghelp newzmat testrt cubegen cubman \
-		c8698 ham506 cktoig rwfdump chkmove freqchk freqmem formchk \
-		demofc chkchk pluck unfchk g98 *.exe gau-machine \
-		${PREFIX}/bin/g98; \
-	  ${INSTALL_SCRIPT} gaussian98 ${PREFIX}/bin; \
-	  ${INSTALL_DATA} ${WRKSRC}/libgauutil.so.1 ${PREFIX}/lib; \
-	  cd ${PREFIX}/lib; ${LN} -sf libgauutil.so.1 libgauutil.so; \
-	  cd ${WRKSRC}/explore/examples; \
-	  ${INSTALL_DATA} * ${PREFIX}/share/gaussian98/explore/examples; \
-	  cd ${WRKSRC}/explore/exercise; \
-	  ${INSTALL_DATA} *  ${PREFIX}/share/gaussian98/explore/exercise; \
-	  cd ${WRKSRC}/explore/quick; \
-	  ${INSTALL_DATA} * ${PREFIX}/share/gaussian98/explore/quick)
-
-.include <bsd.port.post.mk>
diff --git a/biology/gaussian98/distinfo b/biology/gaussian98/distinfo
deleted file mode 100644
index 53b284f4fb13..000000000000
--- a/biology/gaussian98/distinfo
+++ /dev/null
@@ -1 +0,0 @@
-MD5 (WKSSRC.TAR) = a02fb7694140912c2e45905c3bbc26fa
diff --git a/biology/gaussian98/files/gaussian98 b/biology/gaussian98/files/gaussian98
deleted file mode 100644
index 6252371d6ba7..000000000000
--- a/biology/gaussian98/files/gaussian98
+++ /dev/null
@@ -1,15 +0,0 @@
-#!/bin/csh -f
-#   usage:  gaussian98 InputFile 
-# 
-setenv g98root @PREFIX@/bin/
-setenv GAUSS_SCRDIR $cwd
-source @PREFIX@/bin/g98/bsd/g98.login
-setenv GAUSS_EXEDIR @PREFIX@/bin/g98
-if ($#argv == 0 ) then
-	echo "Usage: gaussian98 <input file>"
-	echo "   or  gaussian98 <input file> <output file>"
-else if ($#argv == 1 ) then
-	cat $1 | @PREFIX@/bin/g98/g98 
-else
-	cat $1 | @PREFIX@/bin/g98/g98 >& $2
-endif 
diff --git a/biology/gaussian98/files/patch-aa b/biology/gaussian98/files/patch-aa
deleted file mode 100644
index a766ac06ce81..000000000000
--- a/biology/gaussian98/files/patch-aa
+++ /dev/null
@@ -1,11 +0,0 @@
---- bsd/bldg98.orig	Thu Jun 10 01:50:31 1999
-+++ bsd/bldg98	Sun Dec 10 20:01:51 2000
-@@ -13,7 +13,7 @@
- #
- uname -a
- set makeflag = ""
--set makename = "make"
-+set makename = "${GMAKE}"
- setenv TMPDIR .
- setenv LC_COLLATE C
- setenv LANG C
diff --git a/biology/gaussian98/files/patch-ab b/biology/gaussian98/files/patch-ab
deleted file mode 100644
index 49847f87bfa1..000000000000
--- a/biology/gaussian98/files/patch-ab
+++ /dev/null
@@ -1,345 +0,0 @@
---- bsd/i386.make.orig	Sun May 16 09:08:58 1999
-+++ bsd/i386.make	Thu Feb  8 12:13:25 2001
-@@ -48,12 +48,12 @@
- #
- # switch the following two lines if the optimized blas library is not available.  This
- # library is highly recommended
--# BLAS = blas.a
--BLAS = /usr/local/lib/blas-opt.a /usr/local/lib/blas-f2c.a
-+BLAS = -lblas
-+# BLAS = /usr/local/lib/blas-opt.a /usr/local/lib/blas-f2c.a
- BLASFLAG = -DCA1_DGEMM -DCA2_DGEMM -DCAB_DGEMM -DLV_DSP
- # switch the following two lines if compilation for the pentium is desired instead
- # of for the P6/Pentium-II
--MACH = -tp p6 
-+MACH = #-tp p6 
- # MACH = -tp p5
- #
- BSDDIR = bsd
-@@ -61,6 +61,7 @@
- BSDDIR1 = ../bsd
- MAKELOC1 = -f $(BSDDIR1)/g98.make
- UTILDIR = ..
-+LDFLAGS = -L${PREFIX}/lib
- HLIBDIR = $(g98root)/hermes/lib
- HSRC = $(g98root)/hermes/gxinterface
- HINC = $(g98root)/hermes/include
-@@ -72,7 +73,7 @@
- #
- GAULIBA = util.a 
- #GAULIB = $(GAULIBA) $(BLAS)
--GAULIB = util.so
-+GAULIB = libgauutil.so.1 $(BLAS)
- #
- # Directory pointers only used for linking the profiling version:
- #
-@@ -96,35 +97,36 @@
- # control compilation.
- #
- RUNF2C = f2c -kr -T. -R -Nx400 -Nn1604 -NL800
--RUNCC = cc -g
-+RUNCC = $(CC) -g
- RUNAR  = ar
- RUNRAN = ranlib
- RUNCPP = gau-cpp
- RUNFSP = gau-fsplit
--RUNMAKE = make#
--OPTFLAGO = -malign-double -m486 -fexpensive-optimizations -O3 -ffast-math -funroll-loops
--# Flags for portland compiler.
-+RUNMAKE = ${GMAKE}
-+OPTFLAGO = 
-+# Flags for G77(GNU fortran compiler)
- #
--RUNF77 = pgf77 
-+RUNF77 = ${F77}
- F2CLIB =
- LIBS = 
--UNROLL = -Munroll
--VECTOR = -Mvect=cachesize:524288
-+UNROLL = #-Munroll
-+VECTOR = #-Mvect=cachesize:524288
- TWOH = 
--PC64 = -pc 64 -Kieee
-+PC64 = #-pc 64 -Kieee
- #
- # Standard compilation flags:
- #
- DIMENS = $(DIMENSX) $(TWOH)
--FNOOPT = $(PROFFLAG) -O0 $(TIME)
--FNOOPT64 = $(FNOOPT) $(PC64)
--FOPT1 = $(PROFFLAG) -O1 $(MACH)
--FOPT2 = $(PROFFLAG) -O2 $(MACH)
--FOPT2UN = $(FOPT2) $(UNROLL)
--FOPT2VC = $(FOPT2) $(VECTOR)
--OPTFLAG = $(FOPT2) $(UNROLL) $(VECTOR)
--FFLAGS = $(PROFFLAG) $(OPTFLAG)
--CFLAGS = $(DIMENS) $(OPTFLAGO) $(PROFFLAG)
-+# g77+FreeBSD box is stable enough
-+FNOOPT = $(PROFFLAG) $(FFLAGS)
-+FNOOPT64 = $(PROFFLAG) $(FFLAGS)
-+FOPT1 = $(PROFFLAG) $(FFLAGS)
-+FOPT2 = $(PROFFLAG) $(FFLAGS)
-+FOPT2UN = $(PROFFLAG) $(FFLAGS)
-+FOPT2VC = $(PROFFLAG) $(FFLAGS)
-+#OPTFLAG = $(FOPT2) $(UNROLL) $(VECTOR)
-+#FFLAGS = $(PROFFLAG) $(OPTFLAGS) 
-+CFLAGS = $(DIMENS) $(PROFFLAG) #$(OPTFLAGO) 
- EXTOBJ =
- TESTRTO = 
- #
-@@ -136,7 +138,11 @@
- #
- # Rules for Fortran and C compilation, possible including "on machine"
- #
--#.F.o:
-+.F.o:
-+%.o : %.F
-+	$(RUNCPP) $(DIMENS) $*.F $*.f
-+	$(RUNF77) $(FFLAGS) -c $*.f
-+	rm -f $*.f $*.c
- %.o : %.F
- 	$(RUNCPP) $(DIMENS) $*.F $*.f
- 	$(RUNF77) $(FFLAGS) -c $*.f
-@@ -241,7 +247,7 @@
- 	- (cd extras ; make -f extras.make delexe)
- 
- clean: delexe
--	rm -f util.so cubegen *.a *.o *.lo local/*.a local/*.o local/rpac/*.a \
-+	rm -f libgauutil.so.1 cubegen *.a *.o *.lo local/*.a local/*.o local/rpac/*.a \
- 	  local/rpac/*.o bsd/g98.make local/rpac/rpac.make
- 	- (cd extras ; make -f extras.make clean)
- #
-@@ -257,18 +263,31 @@
- #
- # The generic command line for making a link from its library:
- #
--#.F.exe: 
-+.F.exe: 
-+	$(RUNFSP) -e m$* $(BSDDIR)/main.F
-+	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	rm -f m$*.*
- %.exe : %.F
- 	$(RUNFSP) -e m$* $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o
--	$(RUNF77) $(FFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f m$*.*
- 
- #
- #
- # The generic command for making a link library from source:
- #
--#.F.a:
-+.F.a:
-+	rm -f -r temp-$*
-+	mkdir temp-$*
-+	(cd temp-$* ; $(RUNFSP) ../$*.F ; \
-+	  $(BSDDIR1)/updatelink1 $(BSDDIR1)/g98.make OPTFLAG='$(OPTFLAG)' DO-LIB [a-l]*.F ; \
-+	  ($(RUNAR) rlv ../$*.a [a-l]*.o; exit 0); \
-+	  $(BSDDIR1)/updatelink1 $(BSDDIR1)/g98.make OPTFLAG='$(OPTFLAG)' DO-LIB [m-z]*.F ; \
-+	  ($(RUNAR) rlv ../$*.a [m-z]*.o; exit 0))
-+	rm -f -r temp-$*
-+	$(RUNRAN) $*.a
- %.a : %.F
- 	rm -f -r temp-$*
- 	mkdir temp-$*
-@@ -335,78 +354,78 @@
- g98: $(GAULIB) $(EXTRAS)
- 	$(RUNFSP) -e ml0 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml0.o
--	$(RUNF77) $(FFLAGS) -o g98 ml0.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o g98 ml0.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml0.*
- 
- l302.exe l307.exe l314.exe l701.exe l703.exe l1101.exe l1110.exe: $(EXTRAS)
- 	ar x $(GAULIBA) bdrys.o
- 	$(RUNFSP) -e m$* $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o 
--	$(RUNF77) $(FFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bdrys.o $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bdrys.o $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f m$*.* bdrys.o 
- 
- l402.exe: $(EXTRAS) l402.a  
- 	$(RUNFSP) -e m$* $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o 
- 	ar x l402.a bd0402.o
--	$(RUNF77) $(FFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bd0402.o $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f m$*.* bd0402.o 
- 
- l609.exe: $(EXTRAS) l609.a  
- 	$(RUNFSP) -e m$* $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o 
- 	ar x l609.a bd0609.o
--	$(RUNF77) $(FFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bd0609.o $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f m$*.* bd0609.o 
- 
- l705.exe: $(EXTRAS) l306.a l705.a
- 	$(RUNFSP) -e ml705 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml705.o
--	$(RUNF77) $(FFLAGS) -o l705.exe ml705.o $(EXTOBJ) l705.a l306.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l705.exe ml705.o $(EXTOBJ) l705.a l306.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml705.*
- 
- l709.exe: $(EXTRAS) l309.a l709.a
- 	$(RUNFSP) -e ml709 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml709.o
--	$(RUNF77) $(FFLAGS) -o l709.exe ml709.o $(EXTOBJ) l709.a l309.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l709.exe ml709.o $(EXTOBJ) l709.a l309.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml709.*
- 
- l806.exe: $(EXTRAS) l806.a  
- 	$(RUNFSP) -e m$* $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) $*.a m$*.o 
- 	ar x l806.a bd0806.o
--	$(RUNF77) $(FFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bd0806.o $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o $*.exe m$*.o $(EXTOBJ) $*.a bd0806.o $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f m$*.* bd0806.o 
- 
- l1003.exe: $(EXTRAS) l510.a l1003.a
- 	$(RUNFSP) -e ml1003 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml1003.o
--	$(RUNF77) $(FFLAGS) -o l1003.exe ml1003.o $(EXTOBJ) l1003.a l510.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l1003.exe ml1003.o $(EXTOBJ) l1003.a l510.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml1003.*
- 
- l1004.exe: $(EXTRAS) l1112.a l1004.a
- 	$(RUNFSP) -e ml1004 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml1004.o
--	$(RUNF77) $(FFLAGS) -o l1004.exe ml1004.o $(EXTOBJ) l1004.a l1112.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l1004.exe ml1004.o $(EXTOBJ) l1004.a l1112.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml1004.*
- 
- l1014.exe: $(EXTRAS) l1112.a l1014.a l914.a
- 	$(RUNFSP) -e ml1014 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml1014.o
--	$(RUNF77) $(FFLAGS) -o l1014.exe ml1014.o $(EXTOBJ) l1014.a l1112.a l914.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l1014.exe ml1014.o $(EXTOBJ) l1014.a l1112.a l914.a $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f ml1014.*
- 
- l9999.exe: $(EXTRAS) l9999.a dummy.o dummy-narch.o
- 	$(RUNFSP) -e ml9999 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml9999.o
--	$(RUNF77) $(FFLAGS) -o l9999.exe ml9999.o $(EXTOBJ) $(EXTRAS) l9999.a \
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l9999.exe ml9999.o $(EXTOBJ) $(EXTRAS) l9999.a \
- 	   dummy.o $(GAULIB) dummy-narch.o $(LIBS)
- 	rm -f ml9999.*
- 
- l9999-hermes: $(EXTRAS) l9999.a archlib.a mdarch.a $(HLIBS) gxxlnk.o
- 	$(RUNFSP) -e ml9999 $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ml9999.o
--	$(RUNF77) $(FFLAGS) -o l9999.exe ml9999.o $(EXTOBJ) $(EXTRAS) \
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o l9999.exe ml9999.o $(EXTOBJ) $(EXTRAS) \
- 	  gxxlnk.o l9999.a archlib.a mdarch.a $(GAULIB) dummy-narch.o \
- 	  $(HLIBS) $(LIBS)
- 	rm -f ml9999.*
-@@ -430,13 +449,13 @@
- 
- c8698: $(EXTRAS) c8698.o
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) c8698.o
--	$(RUNF77) $(FFLAGS) -o c8698 c8698.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o c8698 c8698.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- chkchk: $(EXTRAS) chkchk.o
--	$(RUNF77) $(FFLAGS) -o chkchk chkchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o chkchk chkchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- cktoig: $(EXTRAS) cktoig.o
--	$(RUNF77) $(FFLAGS) -o cktoig cktoig.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o cktoig cktoig.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- crendx: crendx.o crendxmfl.o $(GAULIB) $(EXTRAS) archlib.a mdarch.a
- 	$(RUNF77) $(FFLAGS) -o crendx crendx.o crendxmfl.o $(EXTOBJ) $(EXTRAS) \
-@@ -445,62 +464,62 @@
- chkmove: chkmove.o
- 	$(RUNFSP) -e mchkmov $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' mchkmov.o
--	$(RUNF77) $(FFLAGS) -o chkmove mchkmov.o chkmove.o \
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o chkmove mchkmov.o chkmove.o \
- 	  $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm mchkmov.*
- 
- cubman: cubman.o
--	$(RUNF77) $(FFLAGS) -o cubman cubman.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o cubman cubman.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- cubegen: cubegen.o
--	$(RUNF77) $(FFLAGS) -o cubegen cubegen.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o cubegen cubegen.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- freqchk: freqchk.o l716.a newzmat.a
--	$(RUNF77) $(FFLAGS) -o freqchk freqchk.o l716.a newzmat.a $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o freqchk freqchk.o l716.a newzmat.a $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- freqmem: freqmem.o
--	$(RUNF77) $(FFLAGS) -o freqmem freqmem.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o freqmem freqmem.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- formchk: formchk.o
--	$(RUNF77) $(FFLAGS) -o formchk formchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o formchk formchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- demofc: demofc.o
--	$(RUNF77) $(FFLAGS) -o demofc demofc.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o demofc demofc.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- gauopt: $(EXTRAS) gauopt.o
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) gauopt.o
--	$(RUNF77) $(FFLAGS) -o gauopt gauopt.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o gauopt gauopt.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- ghelp: $(EXTRAS) ghelp.o
- 	$(RUNFSP) -e mghelp $(BSDDIR)/main.F
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) ghelp.o mghelp.o
--	$(RUNF77) $(FFLAGS) -o ghelp mghelp.o ghelp.o l9999.a $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o ghelp mghelp.o ghelp.o l9999.a $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 	rm -f mghelp.*
- 
- ham506: ham506.o
--	$(RUNF77) $(FFLAGS) -o ham506 ham506.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o ham506 ham506.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- newzmat: $(EXTRAS) newzmat.a newzmat-bsd.o l101.a l716.a
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) newzmat.a newzmat-bsd.o
--	$(RUNF77) $(FFLAGS) -o newzmat newzmat-bsd.o newzmat.a $(EXTOBJ) \
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o newzmat newzmat-bsd.o newzmat.a $(EXTOBJ) \
- 	    l101.a l401.a l716.a $(EXTRAS) $(GAULIB) $(LIBS)
- 
- pluck: pluck.o
--	$(RUNF77) $(FFLAGS) -o pluck pluck.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o pluck pluck.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- unfchk: unfchk.o
--	$(RUNF77) $(FFLAGS) -o unfchk unfchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o unfchk unfchk.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- reform: reform.o $(GAULIB) $(EXTRAS) archlib.a mdarch.a
- 	$(RUNF77) $(FFLAGS) -o reform reform.o $(EXTOBJ) $(EXTRAS) archlib.a \
- 	   mdarch.a $(GAULIB) $(LIBS)
- 
- rwfdump: rwfdump.o
--	$(RUNF77) $(FFLAGS) -o rwfdump rwfdump.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o rwfdump rwfdump.o $(EXTOBJ) $(EXTRAS) $(GAULIB) $(LIBS)
- 
- testrt: $(EXTRAS) testrt.o l1.a $(TESTRTO)
- 	$(RUNMAKE) $(MAKELOC) OPTFLAG='$(OPTFLAG)' $(EXTRAS) testrt.o $(TESTRTO)
--	$(RUNF77) $(FFLAGS) -o testrt testrt.o $(TESTRTO) $(EXTOBJ) l1.a l9999.a $(EXTRAS) $(GAULIB) $(LIBS)
-+	$(RUNF77) $(FFLAGS) $(LDFLAGS) -o testrt testrt.o $(TESTRTO) $(EXTOBJ) l1.a l9999.a $(EXTRAS) $(GAULIB) $(LIBS)
- 
- gau-cpp: $(BSDDIR)/cpp.c $(BSDDIR)/cpp.h
- 	$(RUNCC) -o gau-cpp -DHOST=SYS_UNIX -Dstrchr=index -Dstrrchr=rindex \
-@@ -784,9 +803,9 @@
- 	rm -f $(@:o=f) $(@:o=c)
- 
- MARCHOBJ = dummy.o
--util.so: $(GAULIBA) dummy.o $(BLAS)
--	ld -shared -o util.so dummy.o --whole-archive util.a \
--	  --no-whole-archive $(BLAS)
-+libgauutil.so.1: $(GAULIBA) dummy.o $(BLAS)
-+	ld  -shared -o libgauutil.so.1 \
-+	    dummy.o  --whole-archive util.a  
- 
- #
- # Here are rules specific to the Gaussian/Linda parallel version:
diff --git a/biology/gaussian98/files/patch-ac b/biology/gaussian98/files/patch-ac
deleted file mode 100644
index 0acd22a08429..000000000000
--- a/biology/gaussian98/files/patch-ac
+++ /dev/null
@@ -1,36 +0,0 @@
---- bsd/mdutil.c.orig	Fri Jun 11 01:44:58 1999
-+++ bsd/mdutil.c	Sun Dec 10 20:01:51 2000
-@@ -1362,6 +1362,11 @@
- #ifndef i386
-   char *sbrk();
- #endif
-+
-+#ifdef __FreeBSD__
-+  char *sbrk();
-+#endif
-+
-   lenbuf = (char *) sbrk(0) - end;
- #endif
-   ifd = (int) *fd;
-@@ -2610,6 +2615,8 @@
- #endif
- 
- #ifdef i386
-+f77_int wait_() { return(wait()); }
-+f77_int fork_() { return(fork()); }
- f77_int loc_ (r) f77_wp *r; {return (f77_int) r; }
- 
- f77_int time_ () { return((f77_int) time((time_t *) NULL)); }
-@@ -2637,7 +2644,12 @@
-   offset_type n;
- #ifdef DO_SHM
-   int shmflags = 0;
-+#ifndef __FreeBSD__
-   void *brkadr, *sbrk();
-+#else
-+  void *brkadr;
-+  char *sbrk();
-+#endif
-   key_t shmkey;
- #ifndef IBM_RS6K
- #ifndef sgi
diff --git a/biology/gaussian98/files/patch-ad b/biology/gaussian98/files/patch-ad
deleted file mode 100644
index 080d8ccdd390..000000000000
--- a/biology/gaussian98/files/patch-ad
+++ /dev/null
@@ -1,28 +0,0 @@
---- bsd/setup-make.orig	Tue Jun  1 10:13:16 1999
-+++ bsd/setup-make	Sun Dec 10 20:01:51 2000
-@@ -31,17 +31,18 @@
-   set mstr = "make"
-   set pstr = "-p"
- else if ("$mach" == "i386") then
--  if (-e $PGI/linux86/bin/pgf77) then
--    set fcflag = "FC='pgf77'"
--    set fcflagp = ""
--    set blas = "BLAS='' UTIL_NAME='{util,archlib,mdarch,lapack}.a'"
--    set fc2flag = "FC2='/usr/local/lib/blas-{opt,f2c}.a'"
--  else
-+# comment out for non-pgf but g77 compiler environment
-+#  if (-e $PGI/linux86/bin/pgf77) then
-+#    set fcflag = "FC='pgf77'"
-+#    set fcflagp = ""
-+#    set blas = "BLAS='' UTIL_NAME='{util,archlib,mdarch,lapack}.a'"
-+#    set fc2flag = "FC2='/usr/local/lib/blas-{opt,f2c}.a'"
-+#  else
-     set fcflag = "FC='cc -g'"
-     set fc2flag = "FC2='-lf2c -lm'"
-     set blas = "UTIL_NAME='{util,archlib,mdarch,util,lapack,blas}.a'"
-     set fc2flag = "FC2=''"
--    endif
-+#   endif
-   set blasp = "$blas"
-   set mstr = "make"
-   set pstr = "-p"
diff --git a/biology/gaussian98/pkg-comment b/biology/gaussian98/pkg-comment
deleted file mode 100644
index 3c5973183b42..000000000000
--- a/biology/gaussian98/pkg-comment
+++ /dev/null
@@ -1 +0,0 @@
-An ab-initio molecular orbital calculation program
diff --git a/biology/gaussian98/pkg-descr b/biology/gaussian98/pkg-descr
deleted file mode 100644
index 3010c2abef7b..000000000000
--- a/biology/gaussian98/pkg-descr
+++ /dev/null
@@ -1,11 +0,0 @@
-Gaussian is ab-initio molecular orbital calculation program
-calculates energy, molecular structure, vibrational frequencies
-from the basic principle of quantum mechanics.
-
-We also included simple launcher called `gaussian98'
-for your convenience. You don't need to set any environment variable
-to run gaussian.
-
-WWW: http://www.gaussian.com/
-- NAKATA, Maho
-  E-mail: chat95@mbox.kyoto-inet.or.jp
diff --git a/biology/gaussian98/pkg-plist b/biology/gaussian98/pkg-plist
deleted file mode 100644
index 4ff4104dae29..000000000000
--- a/biology/gaussian98/pkg-plist
+++ /dev/null
@@ -1,283 +0,0 @@
-bin/gaussian98
-bin/g98/c8698
-bin/g98/chkchk
-bin/g98/chkmove
-bin/g98/cktoig
-bin/g98/cubegen
-bin/g98/cubman
-bin/g98/demofc
-bin/g98/formchk
-bin/g98/freqchk
-bin/g98/freqmem
-bin/g98/g98
-bin/g98/gau-machine
-bin/g98/gauopt
-bin/g98/ghelp
-bin/g98/ham506
-bin/g98/l1.exe
-bin/g98/l1002.exe
-bin/g98/l1003.exe
-bin/g98/l101.exe
-bin/g98/l1014.exe
-bin/g98/l102.exe
-bin/g98/l103.exe
-bin/g98/l105.exe
-bin/g98/l106.exe
-bin/g98/l107.exe
-bin/g98/l108.exe
-bin/g98/l109.exe
-bin/g98/l110.exe
-bin/g98/l1101.exe
-bin/g98/l1102.exe
-bin/g98/l111.exe
-bin/g98/l1110.exe
-bin/g98/l1111.exe
-bin/g98/l1112.exe
-bin/g98/l113.exe
-bin/g98/l114.exe
-bin/g98/l115.exe
-bin/g98/l116.exe
-bin/g98/l117.exe
-bin/g98/l118.exe
-bin/g98/l120.exe
-bin/g98/l202.exe
-bin/g98/l301.exe
-bin/g98/l302.exe
-bin/g98/l303.exe
-bin/g98/l307.exe
-bin/g98/l308.exe
-bin/g98/l310.exe
-bin/g98/l311.exe
-bin/g98/l314.exe
-bin/g98/l315.exe
-bin/g98/l316.exe
-bin/g98/l317.exe
-bin/g98/l318.exe
-bin/g98/l319.exe
-bin/g98/l320.exe
-bin/g98/l401.exe
-bin/g98/l402.exe
-bin/g98/l405.exe
-bin/g98/l502.exe
-bin/g98/l503.exe
-bin/g98/l504.exe
-bin/g98/l506.exe
-bin/g98/l508.exe
-bin/g98/l510.exe
-bin/g98/l601.exe
-bin/g98/l602.exe
-bin/g98/l604.exe
-bin/g98/l607.exe
-bin/g98/l608.exe
-bin/g98/l609.exe
-bin/g98/l610.exe
-bin/g98/l701.exe
-bin/g98/l702.exe
-bin/g98/l703.exe
-bin/g98/l716.exe
-bin/g98/l801.exe
-bin/g98/l802.exe
-bin/g98/l803.exe
-bin/g98/l804.exe
-bin/g98/l811.exe
-bin/g98/l901.exe
-bin/g98/l902.exe
-bin/g98/l903.exe
-bin/g98/l905.exe
-bin/g98/l906.exe
-bin/g98/l908.exe
-bin/g98/l909.exe
-bin/g98/l913.exe
-bin/g98/l914.exe
-bin/g98/l915.exe
-bin/g98/l916.exe
-bin/g98/l918.exe
-bin/g98/l9999.exe
-bin/g98/newzmat
-bin/g98/pluck
-bin/g98/rwfdump
-bin/g98/testrt
-bin/g98/unfchk
-bin/g98/bsd/g98.login
-bin/g98/bsd/gau-unlimit
-bin/g98/bsd/set-mflags
-lib/libgauutil.so
-lib/libgauutil.so.1
-share/gaussian98/explore/examples/e10_01a.com
-share/gaussian98/explore/examples/e10_01b.com
-share/gaussian98/explore/examples/e10_02a.com
-share/gaussian98/explore/examples/e10_02b.com
-share/gaussian98/explore/examples/e10_02c.com
-share/gaussian98/explore/examples/e2_01.com
-share/gaussian98/explore/examples/e2_02.com
-share/gaussian98/explore/examples/e3_01.com
-share/gaussian98/explore/examples/e3_02.com
-share/gaussian98/explore/examples/e3_03.com
-share/gaussian98/explore/examples/e4_01.com
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-share/gaussian98/explore/examples/e4_02b.com
-share/gaussian98/explore/examples/e4_02c.com
-share/gaussian98/explore/examples/e4_02d.com
-share/gaussian98/explore/examples/e5_01.com
-share/gaussian98/explore/examples/e5_02.com
-share/gaussian98/explore/examples/e6_01.com
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-share/gaussian98/explore/examples/e6_05b.com
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-share/gaussian98/explore/examples/e7_01.com
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-share/gaussian98/explore/examples/e7_06.com
-share/gaussian98/explore/examples/e8_01a.com
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-share/gaussian98/explore/examples/e8_02.com
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-share/gaussian98/explore/examples/e8_05.com
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-share/gaussian98/explore/examples/e9_01.com
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-share/gaussian98/explore/examples/ea_01a.com
-share/gaussian98/explore/examples/ea_01b.com
-share/gaussian98/explore/examples/ea_01c.com
-share/gaussian98/explore/exercise/10_01a.com
-share/gaussian98/explore/exercise/10_01b.com
-share/gaussian98/explore/exercise/10_01c.com
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-share/gaussian98/explore/exercise/10_04c.com
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-share/gaussian98/explore/exercise/2_05c.com
-share/gaussian98/explore/exercise/2_06.com
-share/gaussian98/explore/exercise/2_07.com
-share/gaussian98/explore/exercise/2_08a.com
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-share/gaussian98/explore/exercise/3_01a.com
-share/gaussian98/explore/exercise/3_01b.com
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-share/gaussian98/explore/exercise/3_02c.com
-share/gaussian98/explore/exercise/3_03.com
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-share/gaussian98/explore/exercise/3_05a.com
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-share/gaussian98/explore/exercise/3_06b.com
-share/gaussian98/explore/exercise/3_07.com
-share/gaussian98/explore/exercise/3_08.com
-share/gaussian98/explore/exercise/4_01a.com
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-share/gaussian98/explore/exercise/5_01.com
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-share/gaussian98/explore/exercise/6_01a.com
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-share/gaussian98/explore/exercise/6_02b.com
-share/gaussian98/explore/exercise/6_03.com
-share/gaussian98/explore/exercise/6_03x.com
-share/gaussian98/explore/exercise/6_04.com
-share/gaussian98/explore/exercise/6_05a.com
-share/gaussian98/explore/exercise/6_05b.com
-share/gaussian98/explore/exercise/6_06a.com
-share/gaussian98/explore/exercise/6_06b.com
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-share/gaussian98/explore/exercise/6_07a.com
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-share/gaussian98/explore/exercise/6_07c.com
-share/gaussian98/explore/exercise/6_08.com
-share/gaussian98/explore/exercise/6_09.com
-share/gaussian98/explore/exercise/7_01a.com
-share/gaussian98/explore/exercise/7_01b.com
-share/gaussian98/explore/exercise/7_01c.com
-share/gaussian98/explore/exercise/7_01d.com
-share/gaussian98/explore/exercise/7_02a.com
-share/gaussian98/explore/exercise/7_02b.com
-share/gaussian98/explore/exercise/7_02c.com
-share/gaussian98/explore/exercise/8_01a.com
-share/gaussian98/explore/exercise/8_01b.com
-share/gaussian98/explore/exercise/8_01c.com
-share/gaussian98/explore/exercise/8_02a.com
-share/gaussian98/explore/exercise/8_02b.com
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-share/gaussian98/explore/exercise/8_08.com
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-share/gaussian98/explore/exercise/9_01.com
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-share/gaussian98/explore/exercise/9_04a.com
-share/gaussian98/explore/exercise/9_04b.com
-share/gaussian98/explore/exercise/9_05.pdb
-share/gaussian98/explore/exercise/9_05a.com
-share/gaussian98/explore/exercise/9_05b.com
-share/gaussian98/explore/exercise/9_06_ci.pdb
-share/gaussian98/explore/exercise/9_06_gs.pdb
-share/gaussian98/explore/exercise/9_06a.com
-share/gaussian98/explore/exercise/9_06b.com
-share/gaussian98/explore/exercise/9_06c.com
-share/gaussian98/explore/exercise/9_06d.com
-share/gaussian98/explore/exercise/plus.gbs
-share/gaussian98/explore/quick/qs.com
-share/gaussian98/explore/quick/water.pdb
-@dirrm bin/g98/bsd
-@dirrm bin/g98
-@dirrm share/gaussian98/explore/examples
-@dirrm share/gaussian98/explore/exercise
-@dirrm share/gaussian98/explore/quick
-@dirrm share/gaussian98/explore
-@dirrm share/gaussian98
diff --git a/biology/gaussian98/scripts/pre-fetch b/biology/gaussian98/scripts/pre-fetch
deleted file mode 100644
index cfdfc8bfbf3b..000000000000
--- a/biology/gaussian98/scripts/pre-fetch
+++ /dev/null
@@ -1,17 +0,0 @@
-#!/bin/sh
-
-[ -f ${CD_MOUNTPT}/TAR/WKSSRC.TAR ] && exit 0
-
-cat <<_E_O_F
-*****************************************************************
-To Install Gaussian, make sure your purchased CD-ROM is
-mounted on at ${CD_MOUNTPT} or an arbitrary mount point that can be
-specified by setting CD_MOUNTPT variable in a make command line.
-
-e.g.
-	mount /dev/cd0c /mnt/cdrom
-	make CD_MOUNTPT=/mnt/cdrom install
-*****************************************************************
-_E_O_F
-
-exit 1