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| author | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-21 15:10:17 +0000 |
|---|---|---|
| committer | Jason W. Bacon <jwb@FreeBSD.org> | 2021-03-21 15:10:17 +0000 |
| commit | f28acb9dcb1134e9eed638ce0a5f971d012d9a1d (patch) | |
| tree | 661c917e6975fc77bb9018d325c606ce6371d2c9 /biology | |
| parent | 05af9de3b9969b207dcec2f0bab36174f8ede75b (diff) | |
| download | ports-f28acb9dcb1134e9eed638ce0a5f971d012d9a1d.tar.gz ports-f28acb9dcb1134e9eed638ce0a5f971d012d9a1d.zip | |
biology/biolibc: Low-level high-performance bioinformatics library
Biolibc is a library of fast, memory-efficient, low-level functions for
processing biological data. Like libc, it consists of numerous disparate,
general-purpose functions which could be used by a wide variety of
applications. These include functions for streaming common file formats such
as SAM and VCF, string functions specific to bioinformatics, etc.
Notes
Notes:
svn path=/head/; revision=568921
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/biolibc/Makefile | 16 | ||||
| -rw-r--r-- | biology/biolibc/distinfo | 3 | ||||
| -rw-r--r-- | biology/biolibc/pkg-descr | 7 | ||||
| -rw-r--r-- | biology/biolibc/pkg-plist | 6 |
5 files changed, 33 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index 0143926f385f..294c24aa9c6e 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -12,6 +12,7 @@ SUBDIR += bedtools SUBDIR += bioawk SUBDIR += biococoa + SUBDIR += biolibc SUBDIR += bioparser SUBDIR += biosoup SUBDIR += bolt-lmm diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile new file mode 100644 index 000000000000..c1f3108fcd4c --- /dev/null +++ b/biology/biolibc/Makefile @@ -0,0 +1,16 @@ +# $FreeBSD$ + +PORTNAME= biolibc +DISTVERSION= 0.1.1 +CATEGORIES= biology + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Low-level high-performance bioinformatics library + +LICENSE= BSD2CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +USE_GITHUB= yes +GH_ACCOUNT= auerlab + +.include <bsd.port.mk> diff --git a/biology/biolibc/distinfo b/biology/biolibc/distinfo new file mode 100644 index 000000000000..353580791bed --- /dev/null +++ b/biology/biolibc/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1616330997 +SHA256 (auerlab-biolibc-0.1.1_GH0.tar.gz) = 0b4a5a63a17998423a583e05e6244369b0c7195c09d2c1c25f1bcde45d7d6388 +SIZE (auerlab-biolibc-0.1.1_GH0.tar.gz) = 11770 diff --git a/biology/biolibc/pkg-descr b/biology/biolibc/pkg-descr new file mode 100644 index 000000000000..498258899832 --- /dev/null +++ b/biology/biolibc/pkg-descr @@ -0,0 +1,7 @@ +Biolibc is a library of fast, memory-efficient, low-level functions for +processing biological data. Like libc, it consists of numerous disparate, +general-purpose functions which could be used by a wide variety of +applications. These include functions for streaming common file formats such +as SAM and VCF, string functions specific to bioinformatics, etc. + +WWW: https://github.com/auerlab/vcfio diff --git a/biology/biolibc/pkg-plist b/biology/biolibc/pkg-plist new file mode 100644 index 000000000000..ce0fa3da78f3 --- /dev/null +++ b/biology/biolibc/pkg-plist @@ -0,0 +1,6 @@ +include/biostring.h +include/dsvio.h +include/samio.h +include/vcfio.h +lib/libbiolibc.a +man/man1/biolibc.1.gz |