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| author | Yuri Victorovich <yuri@FreeBSD.org> | 2021-01-19 09:01:41 +0000 |
|---|---|---|
| committer | Yuri Victorovich <yuri@FreeBSD.org> | 2021-01-19 09:01:41 +0000 |
| commit | f579f97eec26a1b7ec01d4842130da676a9050e1 (patch) | |
| tree | 2aa3e82b67baba54cf18b4a7468185341e6a7a8f /biology | |
| parent | a6bbf72ad7a1bd00bbd2249bdd65d4534eb8a550 (diff) | |
| download | ports-f579f97eec26a1b7ec01d4842130da676a9050e1.tar.gz ports-f579f97eec26a1b7ec01d4842130da676a9050e1.zip | |
New port: biology/biosoup: Collection of C++ header-only data structures for bioinformatics
Notes
Notes:
svn path=/head/; revision=562035
Diffstat (limited to 'biology')
| -rw-r--r-- | biology/Makefile | 1 | ||||
| -rw-r--r-- | biology/biosoup/Makefile | 38 | ||||
| -rw-r--r-- | biology/biosoup/distinfo | 3 | ||||
| -rw-r--r-- | biology/biosoup/pkg-descr | 4 |
4 files changed, 46 insertions, 0 deletions
diff --git a/biology/Makefile b/biology/Makefile index bfdf4a46405b..826382007633 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -13,6 +13,7 @@ SUBDIR += bioawk SUBDIR += biococoa SUBDIR += bioparser + SUBDIR += biosoup SUBDIR += bolt-lmm SUBDIR += bowtie SUBDIR += bowtie2 diff --git a/biology/biosoup/Makefile b/biology/biosoup/Makefile new file mode 100644 index 000000000000..98aaca49c42f --- /dev/null +++ b/biology/biosoup/Makefile @@ -0,0 +1,38 @@ +# $FreeBSD$ + +PORTNAME= biosoup +DISTVERSION= g20201216 +CATEGORIES= biology devel + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Collection of C++ header-only data structures for bioinformatics + +LICENSE= MIT +LICENSE_FILE= ${WRKSRC}/LICENSE + +TEST_DEPENDS= googletest>0:devel/googletest + +USES= cmake + +USE_GITHUB= yes +GH_ACCOUNT= rvaser +GH_TAGNAME= e2b39f1 + +NO_ARCH= yes + +PLIST_FILES= include/biosoup/nucleic_acid.hpp \ + include/biosoup/overlap.hpp \ + include/biosoup/progress_bar.hpp \ + include/biosoup/sequence.hpp \ + include/biosoup/timer.hpp + +do-install: + cd ${WRKSRC}/include && ${COPYTREE_SHARE} ${PORTNAME} ${STAGEDIR}${PREFIX}/include + +do-test: + @cd ${BUILD_WRKSRC} && \ + ${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} -D${PORTNAME}_build_tests:BOOL=ON ${CMAKE_SOURCE_PATH} && \ + ${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \ + ${BUILD_WRKSRC}/bin/${PORTNAME}_test + +.include <bsd.port.mk> diff --git a/biology/biosoup/distinfo b/biology/biosoup/distinfo new file mode 100644 index 000000000000..701a7ba7d32a --- /dev/null +++ b/biology/biosoup/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1611046547 +SHA256 (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = fe122e65d1691ca781584d8bb42538c5904852ccbb1ec48bc13aa2652b0f9ddc +SIZE (rvaser-biosoup-g20201216-e2b39f1_GH0.tar.gz) = 6979 diff --git a/biology/biosoup/pkg-descr b/biology/biosoup/pkg-descr new file mode 100644 index 000000000000..1d88fceadbcd --- /dev/null +++ b/biology/biosoup/pkg-descr @@ -0,0 +1,4 @@ +Biosoup is a c++ collection of header only data structures used for storage and +logging in bioinformatics tools. + +WWW: https://github.com/rvaser/biosoup |