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* biology/bcf-score: Bcftools plugins for GWAS-VCF summary statisticsJason W. Bacon2023-02-251-0/+1
* biology/wfa2-lib: Exact gap-affine algorithm using homologyJason W. Bacon2023-01-301-0/+1
* biology/atac-seq: Metaport for ATAC-Seq analysisJason W. Bacon2023-01-111-0/+1
* biology/py-biosig: New port: Library for reading and writing different biosig...Yuri Victorovich2022-12-301-0/+1
* biology/rna-seq: Metaport for RNA-Seq analysisJason W. Bacon2022-12-121-0/+1
* biology/fasda: Fast and simple differential analysisJason W. Bacon2022-12-121-0/+1
* biology/py-pyrodigal: New port: Python binding for Prodigal, an ORF finder fo...Yuri Victorovich2022-12-061-0/+1
* biology/metaeuk: New port: Gene discovery and annotation for large-scale euka...Yuri Victorovich2022-11-261-0/+1
* biology/augustus: New port: Genome annotation toolYuri Victorovich2022-11-251-0/+1
* biology/barrnap: New port: BAsic Rapid Ribosomal RNA PredictorYuri Victorovich2022-11-251-0/+1
* biology/megahit: Ultra-fast single-node metagenomics assemblyJason W. Bacon2022-11-221-0/+1
* biology/libcombine: New port: C++ library for working with the COMBINE archiv...Yuri Victorovich2022-10-211-0/+1
* biology/py-valerius: New port: Python bioinformatics toolsYuri Victorovich2022-10-041-0/+1
* biology/kmcp: New port: Accurate metagenomic profiling & fast large-scale ge...Yuri Victorovich2022-08-071-0/+1
* biology/ngs-sdk: Revert: Un-remove, ngs was moved into sra-toolsYuri Victorovich2022-07-071-0/+1
* biology/ngs-sdk: Remove, ngs was moved into sra-toolsYuri Victorovich2022-07-061-1/+0
* biology/mopac: Move to science/mopac; Add TIMESTAMP to distinfo; Take maintai...Yuri Victorovich2022-06-191-1/+0
* biology/py-mrcfile: New port: MRC file I/O library which is used in structura...Yuri Victorovich2022-05-011-0/+1
* biology/fastq-trim: Lightening fast sequence read trimmerJason W. Bacon2022-03-191-0/+1
* biology/py-bcbio-gff: Read and write Generic Feature Format (GFF)Jason W. Bacon2022-02-031-0/+2
* biology/libgff: GFF/GTF parsing library based on GCLibJason W. Bacon2021-12-051-0/+1
* biology/bio-mocha: bcftools plugin for mosaic chromosomal alterationsJason W. Bacon2021-12-031-0/+1
* biology/gffread: GFF/GTF format conversions, filtering, FASTA extraction, etcJason W. Bacon2021-11-101-0/+1
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-10-251-1/+1
* biology/py-deeptools: User-friendly tools for exploring deep-sequencing dataJason W. Bacon2021-10-141-0/+1
* biology/py-bigwig: Rename to biology/py-pybigwigJason W. Bacon2021-10-131-1/+1
* biology/py-pybigwig: remove, duplicate of biology/py-bigwigAntoine Brodin2021-10-131-1/+0
* biology/py-pybigwig: Fix poudriere buildJason W. Bacon2021-10-131-0/+1
* biology/py-pybigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-10-131-0/+1
* biology/py-py2bit: Python interface for 2bit packed nucleotide filesJason W. Bacon2021-10-131-0/+1
* biology/bamutil: Utilities for working with SAM/BAM filesJason W. Bacon2021-10-121-0/+1
* biology/libneurosim: New port: Common interfaces for neuronal simulatorsYuri Victorovich2021-10-081-0/+1
* */Makefile: Sort SUBDIRsPo-Chuan Hsieh2021-09-211-2/+2
* biology/py-libsedml: New port: SED-ML library for PythonYuri Victorovich2021-09-191-0/+1
* biology/libsedml: New port: C++ SED-ML libraryYuri Victorovich2021-09-191-0/+1
* biology/py-libnuml: New port: Numerical Markup Language for PythonYuri Victorovich2021-09-191-0/+1
* biology/libnuml: New port: C++ library for Numerical Markup LanguageYuri Victorovich2021-09-191-0/+1
* biology/sam2pairwise: Show pairwise alignment for each read in a SAM fileJason W. Bacon2021-09-071-0/+1
* biology/py-pywgsim: Modified wgsim genomic data simulatorJason W. Bacon2021-09-061-0/+1
* biology/biolibc-tools: High-performance tools based on biolibcJason W. Bacon2021-08-301-0/+1
* biology/bfc: Correct sequencing errors from Illumina sequencing dataJason W. Bacon2021-08-231-0/+1
* biology/flash: Fast Length Adjustment of SHort readsJason W. Bacon2021-08-231-0/+1
* biology/py-PySCeS: New port: Python Simulator for Cellular SystemsYuri Victorovich2021-08-171-0/+1
* biology/py-python-libsbml: New port: LibSBML Python APIYuri Victorovich2021-08-171-0/+1
* biology/sigviewer: New port: Viewing application for biosignalsYuri Victorovich2021-08-171-0/+1
* biology/biosig: New port: Library for reading and writing different biosignal...Yuri Victorovich2021-08-171-0/+1
* biology/py-ont-fast5-api: Interface to Oxford Nanopore .fast5 filesJason W. Bacon2021-08-131-0/+1
* biology/erminej: Analyses of gene sets, e.g. gene expression profilingJason W. Bacon2021-07-091-0/+1
* biology/py-goatools: Tools for processing and visualizing Gene Ontology termsJason W. Bacon2021-07-021-0/+1
* biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suiteJason W. Bacon2021-06-241-0/+1
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