| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | biology/erminej: Analyses of gene sets, e.g. gene expression profiling | Jason W. Bacon | 2021-07-09 | 1 | -0/+1 |
| * | biology/py-goatools: Tools for processing and visualizing Gene Ontology terms | Jason W. Bacon | 2021-07-02 | 1 | -0/+1 |
| * | biology/mmseqs2: Ultra fast and sensitive sequence search and clustering suite | Jason W. Bacon | 2021-06-24 | 1 | -0/+1 |
| * | biology/sra-tools: NCBI's toolkit for handling data in INSDC Sequence Read Ar... | Jason W. Bacon | 2021-06-22 | 1 | -0/+1 |
| * | biology/biostar-tools: Meta-port for Biostar Handbook tools | Jason W. Bacon | 2021-06-18 | 1 | -0/+1 |
| * | biology/peak-classifier: Classify peaks based on GFF features | Jason W. Bacon | 2021-06-14 | 1 | -0/+1 |
| * | biology/taxonkit: New port: Practical and efficient NCBI taxonomy toolkit | Yuri Victorovich | 2021-05-26 | 1 | -0/+1 |
| * | biology/unikmer: New port: Toolkit for nucleic acid k-mer analysis, set opera... | Yuri Victorovich | 2021-05-26 | 1 | -0/+1 |
| * | New port: biology/seqan3: C++ header-only library for biological sequence ana... | Yuri Victorovich | 2021-05-12 | 1 | -0/+1 |
| * | Hook biology/ucsc-userapps to the build | Antoine Brodin | 2021-04-25 | 1 | -0/+1 |
| * | biology/ncbi-entrez-direct: Access to the NCBI's interconnected databases | Jason W. Bacon | 2021-04-24 | 1 | -0/+1 |
| * | New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R... | Yuri Victorovich | 2021-04-20 | 1 | -0/+1 |
| * | biology/snpeff: Genetic variant annotation and effect prediction toolbox | Jason W. Bacon | 2021-04-18 | 1 | -0/+1 |
| * | biology/bbmap: BBMap short read aligner, and other bioinformatic tools | Jason W. Bacon | 2021-04-18 | 1 | -0/+1 |
| * | biology/readseq: Read and reformat biosequences, Java command-line version | Jason W. Bacon | 2021-04-18 | 1 | -0/+1 |
| * | New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi... | Yuri Victorovich | 2021-04-16 | 1 | -0/+1 |
| * | biology/py-crossmap: Lift over genomics coordinates between assemblies | Jason W. Bacon | 2021-04-12 | 1 | -0/+1 |
| * | biology/py-bigwig: Python access to bigWig files using libBigWig | Jason W. Bacon | 2021-04-12 | 1 | -0/+1 |
| * | New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc... | Yuri Victorovich | 2021-04-12 | 1 | -0/+1 |
| * | Remove expired ports: | Rene Ladan | 2021-04-07 | 1 | -3/+0 |
| * | One more small cleanup, forgotten yesterday. | Mathieu Arnold | 2021-04-07 | 1 | -1/+0 |
| * | Remove # $FreeBSD$ from Makefiles. | Mathieu Arnold | 2021-04-06 | 1 | -2/+0 |
| * | biology/vcf2hap: Generate .hap file from VCF for haplohseq | Jason W. Bacon | 2021-03-23 | 1 | -0/+1 |
| * | biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file | Jason W. Bacon | 2021-03-23 | 1 | -0/+1 |
| * | biology/vcf-split: Split a multi-sample VCF into single-sample VCFs | Jason W. Bacon | 2021-03-21 | 1 | -0/+1 |
| * | biology/biolibc: Low-level high-performance bioinformatics library | Jason W. Bacon | 2021-03-21 | 1 | -0/+1 |
| * | biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format | Jason W. Bacon | 2021-03-15 | 1 | -0/+1 |
| * | Move: biology/py-fastTSNE -> math/py-openTSNE | Yuri Victorovich | 2021-03-13 | 1 | -1/+0 |
| * | New port: biology/rampler: Standalone module for sampling genomic sequences | Yuri Victorovich | 2021-01-19 | 1 | -0/+1 |
| * | New port: biology/edlib: Fast C++ library for sequence alignment using edit d... | Yuri Victorovich | 2021-01-19 | 1 | -0/+1 |
| * | New port: biology/spoa: C++ implementation of the partial order alignment (PO... | Yuri Victorovich | 2021-01-19 | 1 | -0/+1 |
| * | New port: biology/biosoup: Collection of C++ header-only data structures for ... | Yuri Victorovich | 2021-01-19 | 1 | -0/+1 |
| * | New port: biology/bioparser: C++ header only parsing library for several form... | Yuri Victorovich | 2021-01-19 | 1 | -0/+1 |
| * | Hook haplohseq to the build | Antoine Brodin | 2021-01-14 | 1 | -0/+1 |
| * | biology/pooler: Optimise DNA sequencing primer-set combinations | Jason W. Bacon | 2020-11-15 | 1 | -0/+1 |
| * | biology/py-biom-format: Restore in preparation for an update to v2.1.8 | Joseph Mingrone | 2020-09-24 | 1 | -0/+1 |
| * | Remove expired ports: | Rene Ladan | 2020-09-19 | 1 | -2/+0 |
| * | Remove expired ports: | Rene Ladan | 2020-08-27 | 1 | -1/+0 |
| * | Remove deprecated ports: | Rene Ladan | 2020-08-15 | 1 | -1/+0 |
| * | Add rubygem-bio-shell 1.0.0 | Sunpoet Po-Chuan Hsieh | 2020-07-24 | 1 | -0/+1 |
| * | Add rubygem-bio-old-biofetch-emulator 1.0.0 | Sunpoet Po-Chuan Hsieh | 2020-07-24 | 1 | -0/+1 |
| * | Add rubygem-bio-executables 1.0.0 | Sunpoet Po-Chuan Hsieh | 2020-07-24 | 1 | -0/+1 |
| * | biology/picard-tools: CLI tools for manipulating sequencing data | Jason W. Bacon | 2020-06-13 | 1 | -0/+1 |
| * | biology/bioawk: BWK awk modified for biological data | Jason W. Bacon | 2020-06-05 | 1 | -0/+1 |
| * | biology/subread: Read alignment, quantification and mutation discovery | Jason W. Bacon | 2020-06-05 | 1 | -0/+1 |
| * | bioloty/vt: Discovers short variants from Next Generation Sequencing data | Jason W. Bacon | 2020-06-04 | 1 | -0/+1 |
| * | New port: biology/py-hits: Utilities for processing high-throughput sequencin... | Yuri Victorovich | 2020-05-16 | 1 | -0/+1 |
| * | New port: biology/py-scikit-bio: Data structures, algorithms, educational res... | Yuri Victorovich | 2020-05-16 | 1 | -0/+1 |
| * | New port: biology/py-pandas-charm: Library for getting character matrices int... | Yuri Victorovich | 2020-05-16 | 1 | -0/+1 |
| * | New port: biology/py-ete3: Framework for the analysis and visualization of trees | Yuri Victorovich | 2020-05-16 | 1 | -0/+1 |
