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* biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich2021-04-183-6/+11
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* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/abyss: Add PORTSCOUT lineYuri Victorovich2021-03-141-0/+2
| | | | Notes: svn path=/head/; revision=568329
* biology/abyss: Update 2.2.4 -> 2.2.5Yuri Victorovich2020-09-273-6/+5
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=550242
* Chanse update of devel/libffiNiclas Zeising2020-07-041-0/+1
| | | | | | | | | | | | | Chase the devel/libffi update Bump portrevision of all dependent ports to chace shard library version bump in libffi. Update LIB_DEPENDS lines where needed to not require a specific version of libffi.so. PR: 247028 (for tracking) Notes: svn path=/head/; revision=541232
* biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich2020-05-302-5/+4
| | | | Notes: svn path=/head/; revision=537064
* Drop dependency on devel/openmpJan Beich2020-03-081-2/+2
| | | | | | | | | | - Drop if devel/llvm* was used as a substitute Approved by: yuri, rene (earlier version) Differential Revision: https://reviews.freebsd.org/D23020 Notes: svn path=/head/; revision=528082
* biology/abyss: Broken on i386Yuri Victorovich2020-01-181-0/+2
| | | | | | | Reported by: fallout Notes: svn path=/head/; revision=523491
* biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich2020-01-133-14/+8
| | | | | | | Reported by: portscout Notes: svn path=/head/; revision=522851
* devel/boost-*: update to 1.72.0Jan Beich2019-12-111-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_72_0.html PR: 241449 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D22136 Notes: svn path=/head/; revision=519824
* devel/openmp: update to 9.0.0Jan Beich2019-09-211-1/+1
| | | | | | | | | | | - Connect tests to the framework to help QA remaining patches - Force rebuild all consumers after https://reviews.llvm.org/D59783 Changes: http://llvm.org/viewvc/llvm-project/openmp/tags/RELEASE_900/final/?view=log ABI: https://abi-laboratory.pro/tracker/timeline/llvm_openmp/ Notes: svn path=/head/; revision=512535
* devel/boost-*: update to 1.71.0Jan Beich2019-08-191-1/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_71_0.html PR: 238827 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D20774 Notes: svn path=/head/; revision=509290
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-261-1/+1
| | | | | | | | | | | | | | | | | | as defined in Mk/bsd.default-versions.mk which has moved from GCC 8.3 to GCC 9.1 under most circumstances now after revision 507371. This includes ports - with USE_GCC=yes or USE_GCC=any, - with USES=fortran, - using Mk/bsd.octave.mk which in turn features USES=fortran, and - with USES=compiler specifying openmp, nestedfct, c11, c++0x, c++11-lang, c++11-lib, c++14-lang, c++17-lang, or gcc-c++11-lib plus, everything INDEX-11 shows with a dependency on lang/gcc9 now. PR: 238330 Notes: svn path=/head/; revision=507372
* biology/abyss: fix build on big-endian architecturesPiotr Kubaj2019-06-213-2/+20
| | | | | | | | | | | | | | | Use new GCC from ports on GCC architectures. Merge 25eb9d2a914fb211fdfe04fcda5593f29fd23ff5, fixes build on GCC architectures. Also include sys/endian.h and use bswap32 and bswap64 for byte-swapping (PR at https://github.com/bcgsc/abyss/pull/287 ). PR: 238737 Approved by: yuri (maintainer), mat (mentor) Differential Revision: https://reviews.freebsd.org/D20717 Notes: svn path=/head/; revision=504788
* devel/openmp: phase outJan Beich2019-05-081-1/+1
| | | | | | | | | | | | - Expire after the last version without /usr/lib/libomp.so - Drop SOVERSION for seamless transition (i.e., avoid conditionals) PR: 236907 Approved by: bapt (maintainer) Differential Revision: https://reviews.freebsd.org/D19767 Notes: svn path=/head/; revision=501030
* devel/boost-*: update to 1.70.0Jan Beich2019-04-121-0/+1
| | | | | | | | | | Changes: http://www.boost.org/users/history/version_1_70_0.html PR: 235956 Exp-run by: antoine Differential Revision: https://reviews.freebsd.org/D19303 Notes: svn path=/head/; revision=498698
* New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end ↵Yuri Victorovich2019-02-255-0/+115
sequence assembler Notes: svn path=/head/; revision=493842
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