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* biology/bwa: don't use GCC on powerpc64lePiotr Kubaj2021-12-011-3/+0
| | | | Now that the port uses simde, it builds fine without gcc's translation.
* biology/bwa: Unbreak on most non-x86 platforms using simdeJason W. Bacon2021-12-012-7/+17
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* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-071-1/+0
| | | | Reported by: lwhsu
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* biology/bwa: fix build on powerpc64lePiotr Kubaj2021-03-021-2/+5
| | | | | | | | | | | | Use GCC's SSE->Altivec translation: In file included from ksw.c:29: In file included from /usr/lib/clang/11.0.1/include/emmintrin.h:13: In file included from /usr/lib/clang/11.0.1/include/xmmintrin.h:13: /usr/lib/clang/11.0.1/include/mmintrin.h:50:12: error: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size return (__m64)__builtin_ia32_vec_init_v2si(__i, 0); Notes: svn path=/head/; revision=566960
* For ports on riscv64 that fail the same (or similar ways) to aarch64, markMark Linimon2021-01-021-0/+1
| | | | | | | | | | | them BROKEN. While here, pet portlint (Makevar order). Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=559904
* biology/bwa: fix build on recent currentTobias C. Berner2020-08-282-1/+6
| | | | | | | Obtained from: https://github.com/lh3/bwa/commit/2a1ae7b6f34a96ea25be007ac9d91e57e9d32284 Notes: svn path=/head/; revision=546721
* Multiple ports:Jason W. Bacon2018-01-311-2/+1
| | | | | | | | | | | Change maintainer email bacon4000@gmail.com to jwb@FreeBSD.org Remove Created by comments for same user Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D14128 Notes: svn path=/head/; revision=460452
* [unbreak] biology/bwa: Remove old patch filesJason W. Bacon2017-12-013-37/+0
| | | | | | | | Approved by: jrm Differential Revision: https://reviews.freebsd.org/D13314 Notes: svn path=/head/; revision=455246
* For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon2017-11-301-0/+1
| | | | | | | | | | | | | armv7, mark them so. This is part two of a multipart commit to bring armv7 ports to parity with armv6. Approved by: portmgr (tier-2 blanket) Obtained from: lonesome.com -exp run Notes: svn path=/head/; revision=455167
* biology/bwa: Upgrade to 0.7.17Jason W. Bacon2017-11-282-5/+10
| | | | | | | | Approved by: jrm (mentor) Differential Revision: https://reviews.freebsd.org/D13283 Notes: svn path=/head/; revision=455045
* Mark some ports failing on armv6, for errors classified as "???".Mark Linimon2017-05-261-2/+5
| | | | | | | | | While here, pet portlint. Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=441814
* Mark some ports failing on power64. In cases where the error messageMark Linimon2017-05-131-0/+1
| | | | | | | | | | | was a stub, provide a real one. While here, pet portlint. Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=440746
* Mark various ports broken on aarch64 and armv6.Mark Linimon2017-01-311-0/+2
| | | | | | | Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=432897
* Update WWW: SF redirects to https://sourceforge.net/projects/<PROJECT_NAME>/Sunpoet Po-Chuan Hsieh2017-01-201-1/+1
| | | | Notes: svn path=/head/; revision=431996
* Attempt to fix build on non-x86 archs.Mark Linimon2016-11-111-3/+5
| | | | | | | Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=425878
* mark some of the ports that don't build on powerpc64 for meSteve Wills2015-12-131-0/+2
| | | | Notes: svn path=/head/; revision=403676
* - Update maintainer mail addressMartin Wilke2015-12-111-2/+2
| | | | | | | | | | | | - Update/Remove MASTER_SITE PR: 204755 Submitted by: jwbacon@tds.net (maintainer) Approved by: mat (mentor) Differential Revision: D4493 Notes: svn path=/head/; revision=403506
* BWA is a program for aligning sequencing reads against a large referenceRuslan Makhmatkhanov2015-09-257-0/+83
genome (e.g. human genome). It has two major components, one for read shorter than 150bp and the other for longer reads. WWW: http://sourceforge.net/projects/bio-bwa/ PR: 203158 Submitted by: Jason Bacon <jwbacon@tds.net> Notes: svn path=/head/; revision=397851
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