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* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-061-1/+0
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* Chase security/p11-kit updateRoman Bogorodskiy2020-08-301-1/+1
| | | | | | | | | | | | | | After switch to meson libp11-kit.so no longer has symbols in the LIBP11_KIT_1.0 namespace. As a workaround, bump PORTREVISION of consumers to get those rebuilt. See more details in the comments of the linked PR. PR: 248819 Reported by: John Hein Notes: svn path=/head/; revision=546967
* Bump PORTREVISION for security/nettle shlib changeSunpoet Po-Chuan Hsieh2020-05-161-1/+1
| | | | Notes: svn path=/head/; revision=535391
* biologi/ncbi-toolkit: Remove dependency on libXpNiclas Zeising2019-09-281-5/+4
| | | | | | | | | Remove the dependency on libXp from ncbi-toolkit, since libXp is deprecated and it isn't needed. Remove deprecation from ncbi-toolkit. Notes: svn path=/head/; revision=513114
* Deprecate x11/libXp, it is deprecated upstreamNiclas Zeising2019-09-271-1/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | Deprecate x11/libXp, since it is about to be deprecated upstream. Do *not* yet set a removal date for x11/libXp, this will be decided later, once most dependencies are fixed. Deprecate all ports depending on x11/libXp. * astro/xephem * audio/xmcd * audio/xmmix * biology/ncbi-toolkit * deskutils/xmdiary * ftp/llnlxdir * ftp/llnlxftp * graphics/SciPlot * misc/xtar * multimedia/mpeg2play * science/afni * textproc/mgdiff Sprinkle USES=xorg as needed. Discussed with: bapt Notes: svn path=/head/; revision=513046
* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-131-4/+6
| | | | Notes: svn path=/head/; revision=508834
* Update security/nettle to 3.5.1Sunpoet Po-Chuan Hsieh2019-07-091-1/+1
| | | | | | | | | | | | | - Bump PORTREVISION of dependent ports for shlib change - Fix build of devel/pijul [1] Changes: https://git.lysator.liu.se/nettle/nettle/blob/master/NEWS PR: 238991 Exp-run by: antoine Thanks to: tobik [1] Notes: svn path=/head/; revision=506289
* Update dns/libidn2 to 2.1.1Sunpoet Po-Chuan Hsieh2019-02-091-1/+1
| | | | | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://gitlab.com/libidn/libidn2/blob/master/NEWS Notes: svn path=/head/; revision=492534
* Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh2019-01-061-0/+1
| | | | | | | | | - Bump PORTREVISION of dependent ports for shlib change Changes: https://gitlab.com/libidn/libidn2/blob/master/NEWS Notes: svn path=/head/; revision=489529
* Fix build failure with base GCC because of double typedefs.Mark Linimon2018-11-051-0/+48
| | | | | | | | | PR: 232457 Submitted by: Piotr Kubaj Approved by: portmgr (tier-2 blanket) Notes: svn path=/head/; revision=484211
* biology/ncbi-toolkit: Update 2012.06.20 -> 2017.01.06Yuri Victorovich2018-10-076-175/+87
| | | | | | | | | | | Port changes: * Take maintainership * Add to LIB_DEPENDS and USExx * Remove lists of executables and manpages, use file listing instead (*) * Update WWW Notes: svn path=/head/; revision=481472
* Remove libjpeg.so.11 compatibility link that was added in r374303 toTijl Coosemans2016-12-081-0/+1
| | | | | | | | prevent massive PORTREVISION bumps. Bump dependent ports that have not been bumped since. Notes: svn path=/head/; revision=428135
* Cleanup no longer needed CHMOD usage after r424898.Mathieu Arnold2016-11-021-4/+2
| | | | | | | | | | PR: 213743 Submitted by: mat Exp-run by: antoine Sponsored by: Absolight Notes: svn path=/head/; revision=425174
* - Add missing dependency, fixing buildDmitry Marakasov2016-06-241-1/+5
| | | | | | | - Switch to options helpers Notes: svn path=/head/; revision=417414
* Cleanup plistBaptiste Daroussin2014-10-201-9/+0
| | | | Notes: svn path=/head/; revision=371237
* Add staging supportPawel Pekala2014-03-232-34/+60
| | | | Notes: svn path=/head/; revision=348888
* Add NO_STAGE all over the place in preparation for the staging support (cat: ↵Baptiste Daroussin2013-09-201-0/+1
| | | | | | | biology) Notes: svn path=/head/; revision=327709
* - Make ports use the libc provided iconv implementation on 10-CURRENTGuido Falsi2013-09-043-3/+5
| | | | | | | | | | | | | after r254273 - Fix a bunch of ports to properly work after this - Mark converters/libiconv as IGNORE for systems with iconv in libc Reviewed by: bapt Approved by: portmgr (bapt) Discussed with: bapt, bsam (who both contributed ideas and code) Notes: svn path=/head/; revision=326307
* Convert from USE_MOTIF to USES=motifBaptiste Daroussin2013-07-091-1/+1
| | | | | | | | | | While here: - trim headers - Remove indefinite article from comment - convert USE_GMAKE to USES=gmake Notes: svn path=/head/; revision=322587
* - Update to 2012.06.20Martin Wilke2013-03-146-191/+173
| | | | | | | | PR: 176544 Submitted by: Ports Fury Notes: svn path=/head/; revision=314129
* - Reassign to the heap at maintainer's requestThomas Abthorpe2012-10-011-7/+2
| | | | Notes: svn path=/head/; revision=305130
* - remove maintainer tags from pkg-descrEitan Adler2011-10-221-2/+0
| | | | | | | | Approved by: portmgr Approved by: bapt (mentor) Notes: svn path=/head/; revision=284139
* Fix build with open-motif-2.3.3Max Brazhnikov2011-05-023-7/+72
| | | | | | | | | PR: ports/154044 Submitted by: Mikhail Tsatsenko <m.tsatsenko at gmail.com> Exp-runs by: pav Notes: svn path=/head/; revision=273474
* - Get Rid MD5 supportMartin Wilke2011-03-191-1/+0
| | | | Notes: svn path=/head/; revision=271305
* - use $SUB_FILES to dynamically adjust pkg-messagePhilip M. Gollucci2010-01-311-2/+1
| | | | | | | | | PR: ports/142408 Submitted by: Sevan Janiyan <venture37@geeklan.co.uk> Approved by: fernan@iib.unsam.edu.ar (maintainer) Notes: svn path=/head/; revision=248917
* - Update to 2009.03.01Martin Wilke2009-03-283-30/+93
| | | | | | | | | PR: 133099 Submitted by: Fernan Aguero <fernan.aguero@gmail.com> Approved by: maintainer Notes: svn path=/head/; revision=231202
* - Remove unneeded dependency from gtk12/gtk20 [1]Martin Wilke2008-04-191-1/+1
| | | | | | | | | | | | | | | | | | - Remove USE_XLIB/USE_X_PREFIX/USE_XPM in favor of USE_XORG - Remove X11BASE support in favor of LOCALBASE or PREFIX - Use USE_LDCONFIG instead of INSTALLS_SHLIB - Remove unneeded USE_GCC 3.4+ Thanks to all Helpers: Dmitry Marakasov, Chess Griffin, beech@, dinoex, rafan, gahr, ehaupt, nox, itetcu, flz, pav PR: 116263 Tested on: pointyhat Approved by: portmgr (pav) Notes: svn path=/head/; revision=211584
* - Welcome X.org 7.2 \o/.Florent Thoumie2007-05-191-0/+1
| | | | | | | | - Set X11BASE to ${LOCALBASE} for recent ${OSVERSION}. - Bump PORTREVISION for ports intalling files in ${X11BASE}. Notes: svn path=/head/; revision=191544
* - Respect X11BASERong-En Fan2006-12-091-0/+5
| | | | | | | Approved by: portmgr (linimon) Notes: svn path=/head/; revision=179256
* Update biology/ncbi-toolkit to the latest release.Ion-Mihai Tetcu2006-06-063-5/+11
| | | | | | | | | | | | | | | Quoting from www.ncbi.nlm.nih.gov/blast/blast_whatsnew.shtml Major changes include: blastall now uses the new engine by default, resulting in significant performance improvements and enabling query concatenation for all program types. PR: ports/98570 Submitted by: maintainer Approved by: lawrance (mentor, implict) Notes: svn path=/head/; revision=164601
* Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtryEdwin Groothuis2006-01-221-1/+1
| | | | | | | | Approved by: krion@ PR: ports/88711 (related) Notes: svn path=/head/; revision=154109
* - Update to 2005.12.06Pav Lucistnik2006-01-144-44/+60
| | | | | | | | PR: ports/91714 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=153494
* - Update to 20050605Sergey Matveychuk2005-10-115-20/+36
| | | | | | | | PR: ports/87266 Submitted by: maintainer Notes: svn path=/head/; revision=145033
* Don't strip static libraries on installation ;)Volker Stolz2005-09-141-1/+2
| | | | | | | (Unbreaks e.g. biology/nclever) Notes: svn path=/head/; revision=142695
* - Fix man page damage I did last nightPav Lucistnik2005-03-201-7/+9
| | | | | | | Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Notes: svn path=/head/; revision=131713
* - Update to 2.2.10 from 20041020Pav Lucistnik2005-03-196-196/+161
| | | | | | | | | | | | - Transfer maintainership PR: ports/67735 Submitted by: Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer) Approved by: old maintainer indirectly in http://lists.freebsd.org/pipermail/freebsd-ports-bugs/2004-June/035351.html Notes: svn path=/head/; revision=131662
* - Update to 2004.06.16Pav Lucistnik2004-11-014-167/+276
| | | | | | | | Inspired by: ports/72726 Approved by: maintainer timeout (2 weeks) Notes: svn path=/head/; revision=120614
* Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.Trevor Johnson2003-11-131-1/+1
| | | | Notes: svn path=/head/; revision=93890
* Cosmetic fix: use %%DOCSDIR%% macro.Sergey A. Osokin2003-10-221-51/+51
| | | | | | | | | | No functionally changes. Submitted by: Oleg Karachevtsev <ok@etrust.ru> A part of PR: 57992 Notes: svn path=/head/; revision=91882
* Update to 2003.04.21Tilman Keskinoz2003-05-058-79/+59
| | | | | | | | PR: 51709 Submitted by: Tony Maher <tonymaher@optushome.com.au> Notes: svn path=/head/; revision=80172
* De-pkg-comment.Akinori MUSHA2003-02-212-1/+1
| | | | Notes: svn path=/head/; revision=76030
* add forgotten "USE_REINPLACE=yes"Ying-Chieh Liao2002-09-211-0/+1
| | | | | | | Submitted by: maintainer Notes: svn path=/head/; revision=67009
* upgrade to 20020426Ying-Chieh Liao2002-09-216-22/+16
| | | | | | | | PR: 39357 Submitted by: maintainer Notes: svn path=/head/; revision=66997
* Correct MASTER_SITES.Pete Fritchman2002-06-081-1/+1
| | | | | | | | PR: 39016 Submitted by: maintainer Notes: svn path=/head/; revision=60819
* Update to 2001.12.20Patrick Li2002-02-226-18/+88
| | | | | | | | PR: 35203 Submitted by: maintainer Notes: svn path=/head/; revision=55075
* - Add installation of include filesJohann Visagie2001-09-194-134/+445
| | | | | | | | | | - Bump PORTREVISION PR: 30660 Submitted by: Tony Maher <tonym@biolateral.com.au> (MAINTAINER) Notes: svn path=/head/; revision=47987
* Update maintainer's email address.Johann Visagie2001-08-061-1/+1
| | | | | | | Approved by: MAINTAINER Notes: svn path=/head/; revision=45865
* Update Tony Maher's email address.Bill Fenner2001-07-101-1/+1
| | | | Notes: svn path=/head/; revision=45012
* Update to version 2001.04.03; add installation of some documentation.Johann Visagie2001-06-205-30/+86
| | | | | | | Approved by: MAINTAINER Notes: svn path=/head/; revision=44254
* Remove trailing period and package name from the pkg-comment.Dmitry Sivachenko2000-12-181-1/+1
| | | | Notes: svn path=/head/; revision=36071