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* biology/gemma: Unbreak buildJason W. Bacon2020-01-144-9/+44
* devel/jsoncpp: Update 1.8.1 -> 1.9.2Yuri Victorovich2020-01-131-0/+1
* biology/muscle: update to 3.8.1551Fernando Apesteguía2020-01-135-48/+44
* biology/tRNAscan-SE: update to 2.0.5Fernando Apesteguía2020-01-132-7/+7
* biology/abyss: Update 2.1.5 -> 2.2.3Yuri Victorovich2020-01-133-14/+8
* biology/ngs-sdk: Update 2.10.0 -> 2.10.1Yuri Victorovich2020-01-123-5/+5
* biology/py-macs2: Upgrade to 2.2.6Jason W. Bacon2020-01-112-14/+11
* Remove outdated CONFLICTS: p5-bioperl-run was renamed to p5-BioPerl-Run over ...Sunpoet Po-Chuan Hsieh2020-01-081-2/+0
* Update to 1.7.5Sunpoet Po-Chuan Hsieh2020-01-083-8/+5
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2020-01-081-2/+3
* biology/viennarna: Update 2.4.13 -> 2.4.14Yuri Victorovich2020-01-063-5/+8
* biology/gatk: Update 4.1.2.0-43 -> 4.1.3.0Yuri Victorovich2020-01-052-7/+6
* Mark a few ports broken (unfetchable)Antoine Brodin2020-01-051-0/+1
* biology/py-gffutils: Update 0.9 -> 0.10Yuri Victorovich2019-12-312-9/+8
* Update devel/tbb to 2020.0 and bump dependent ports' revisions [1]Ganael LAPLANCHE2019-12-261-1/+1
* biology/ncbi-blast+: Upgrade to 2.10.0Jason W. Bacon2019-12-265-29/+49
* Deprecate a few portsAntoine Brodin2019-12-262-0/+6
* biology/bedtools: Upgrade to 2.29.2Jason W. Bacon2019-12-192-4/+4
* devel/boost-*: update to 1.72.0Jan Beich2019-12-1111-9/+11
* biology/bedtools: Upgrade to 2.29.1Jason W. Bacon2019-12-112-4/+4
* Update to 1.007007 (1.7.7)Sunpoet Po-Chuan Hsieh2019-12-083-7/+5
* Update *_DEPENDSSunpoet Po-Chuan Hsieh2019-12-081-2/+3
* Install Bio::SeqIO::entrezgeneSunpoet Po-Chuan Hsieh2019-12-082-5/+4
* Add p5-Bio-Variation 1.7.4Sunpoet Po-Chuan Hsieh2019-12-085-0/+64
* Add p5-Bio-DB-NCBIHelper 1.7.6Sunpoet Po-Chuan Hsieh2019-12-085-0/+64
* Add p5-Bio-DB-EMBL 1.7.4Sunpoet Po-Chuan Hsieh2019-12-085-0/+44
* biology/phyml: disable -march=nativePiotr Kubaj2019-12-061-1/+2
* biology/unanimity: Remove erroneous BROKENJason W. Bacon2019-11-281-2/+0
* Clean up after java/openjdk6 and java/openjdk6-jre removalJung-uk Kim2019-11-265-6/+2
* biology/py-multiqc: Upgrade to 1.8Jason W. Bacon2019-11-264-51/+9
* biology/p5-TrimGalore: Upgrade to 0.6.5Jason W. Bacon2019-11-262-4/+4
* biology/unanimity and dependencies: Flag as no longer open sourceJason W. Bacon2019-11-244-4/+12
* biology/py-cutadapt: Upgrade to 2.7Jason W. Bacon2019-11-232-8/+7
* biology/py-dnaio: Upgrade to 0.4.1Jason W. Bacon2019-11-232-4/+6
* biology/py-bx-python: Update 0.8.4 -> 0.8.6Yuri Victorovich2019-11-232-5/+4
* biology/paml: Update to version 4.9jJoseph Mingrone2019-11-222-6/+4
* biology/diamond: Update to v0.9.29Joseph Mingrone2019-11-202-4/+4
* Create devel/gradle5 in preparation of devel/gradle updateTobias Kortkamp2019-11-201-2/+2
* biology/haplohseq: Switch to distfile with example dataJason W. Bacon2019-11-178-9/+131
* biology/canu: Upgrade to 1.9Jason W. Bacon2019-11-084-127/+12
* - Limit python version (does not build with 3.7+)Dmitry Marakasov2019-11-081-1/+1
* a-b: Add missing USES={gnome,php,sdl,xorg}Tobias Kortkamp2019-11-082-2/+2
* Sprinkle more USES=xorgNiclas Zeising2019-11-071-1/+1
* biology/diamond: Update to version 0.9.28Joseph Mingrone2019-11-073-13/+4
* Mark a few ports BROKEN, unfetchableAntoine Brodin2019-11-068-0/+16
* biology/kallisto: Upgrade to 0.46.1Jason W. Bacon2019-11-062-5/+4
* Add USES=xorg USES=gl, ports categories bNiclas Zeising2019-11-049-9/+10
* biology/diamond: Update to version 0.9.27 (plus one fix)Joseph Mingrone2019-11-032-7/+5
* math/gsl: update to 2.6Tobias C. Berner2019-10-253-2/+5
* biology/avida: unbreak on powerpc64Piotr Kubaj2019-10-231-2/+1
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