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* Mk/**java.mk: Convert bsd.java.mk to USESMuhammad Moinur Rahman2024-12-3117-35/+17
* biology/vsearch: Update to 2.29.2Jason W. Bacon2024-12-292-4/+4
* Mk/bsd.commands.mk: Use absolute path to define GMAKETijl Coosemans2024-12-291-1/+1
* */*: bump PORTREVISION following sse2neon updateRobert Clausecker2024-12-261-0/+1
* */*: Use Gnome helper for defining libxml2 dependencyDaniel Engberg2024-12-231-3/+3
* biology/py-dnaio: Update to 1.2.3Wen Heping2024-12-202-6/+7
* biology/seqwish: Broken on 13Yuri Victorovich2024-12-201-0/+1
* biology/coverm: Broken on arm64Yuri Victorovich2024-12-161-0/+1
* biology/py-bx-python: update 0.11.0 → 0.13.0Yuri Victorovich2024-12-152-6/+8
* biology/checkm: update 1.2.2 → 1.2.3Älven2024-12-153-15/+17
* biology/py-multiqc: Add missing py-natsort RUN_DEPENDJason W. Bacon2024-12-121-1/+3
* biology/seqwish: disable march=native, fixing build on non-x86Piotr Kubaj2024-12-112-1/+27
* biology/hyphy: Update to 2.5.64Älven2024-12-103-9/+12
* biology/gemma: Update to 0.98.5Jason W. Bacon2024-12-063-6/+27
* biology/py-gtfparse: Fix fetchYuri Victorovich2024-12-061-3/+4
* biology/btllib: update 1.7.3 → 1.7.5Yuri Victorovich2024-12-052-4/+4
* biology/ncbi-cxx-toolkit: update 28.0.10 → 28.0.11Yuri Victorovich2024-12-042-4/+4
* biology/fasttree: Update to 2.1.11Jason W. Bacon2024-12-033-12/+12
* lang/rust: Bump revisions after 1.83.0Mikael Urankar2024-12-011-1/+1
* all: return jmd's ports to the pool after safekeeping their commit bit.Rene Ladan2024-11-281-1/+1
* biology/ucsc-userapps: Update to v474Jason W. Bacon2024-11-283-23/+9
* py-htseq: New maintainerJason W. Bacon2024-11-281-1/+1
* biology/py-htseq: Update to 2.0.9Jason W. Bacon2024-11-272-5/+6
* biology/vcflib: Update to 1.0.12Jason W. Bacon2024-11-254-67/+58
* preseq: Not for 32-bit platformsJason W. Bacon2024-11-241-0/+3
* bwa: New maintainerJason W. Bacon2024-11-241-1/+1
* biology/bwa: Update to 0.7.18Jason W. Bacon2024-11-244-30/+34
* biology/preseq: Predict yield of distinct reads from a genomic libraryJason W. Bacon2024-11-225-0/+47
* devel/grpc: Update to 1.68.0Po-Chuan Hsieh2024-11-211-1/+1
* biology/py-multiqc: Update to 1.25.2Jason W. Bacon2024-11-212-4/+4
* devel/boost: bump consu,ers after update Boost to 1.86 releaseDima Panov2024-11-209-9/+9
* biology/sra-tools: Update to 3.1.1Jason W. Bacon2024-11-1736-760/+70
* biology/sra-tools: Quick fix to unbreak buildJason W. Bacon2024-11-162-1/+2
* biology/fastp: Update to 0.24.0Jason W. Bacon2024-11-162-4/+4
* biology/py-gtfparse: update 1.3.0 → 2.5.0Yuri Victorovich2024-11-162-9/+10
* biology/seqwish: Broken on 15 with clng-19Yuri Victorovich2024-11-161-0/+1
* biology/py-multiqc: Update to 1.25.1Jason W. Bacon2024-11-163-23/+27
* biology/ucsc-userapps: remove ONLY_FOR_ARCHSRobert Clausecker2024-11-141-3/+0
* biology/ncbi-cxx-toolkit: update 28.0.9 → 28.0.10Yuri Victorovich2024-11-132-4/+4
* biology/py-python-libsbml: update 5.20.1 → 5.20.4Yuri Victorovich2024-11-123-2596/+4
* biology/py-pyrodigal: update 3.5.2 → 3.6.3Yuri Victorovich2024-11-122-10/+12
* Bump PORTREVISIONs after grpc shlib change in 2715f16944541b6bJoseph Mingrone2024-11-121-1/+1
* biology/py-resdk: update 21.2.0 → 21.2.1Älven2024-11-113-8/+7
* biology/seqwish: update 0.7.10 → 0.7.11Yuri Victorovich2024-11-092-5/+5
* lang/rust: Bump revisions after 1.82.0Mikael Urankar2024-11-081-0/+1
* biology/biostar-tools: Update to 2.0Jason W. Bacon2024-11-086-20/+21
* biology/ucsc-userapps: Change license to MITJason W. Bacon2024-11-071-7/+3
* biology/ucsc-userapps: Update to 472Jason W. Bacon2024-11-079-29/+61
* biology/ncbi-vdb: Deprecate and set expiration date to 2024-12-31Daniel Engberg2024-11-061-0/+3
* biology/mothur: update 1.48.1 → 1.48.2Yuri Victorovich2024-11-052-4/+4
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