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* math/gsl: update to 2.6Tobias C. Berner2019-10-253-2/+5
* biology/avida: unbreak on powerpc64Piotr Kubaj2019-10-231-2/+1
* Remove expired ports:Rene Ladan2019-10-169-131/+0
* biology/prodigal: Eliminate a very old version from the portscout discovery p...Yuri Victorovich2019-10-121-0/+2
* biology/prodigal: Update 2.6.3-2 -> 2.6.3-7Yuri Victorovich2019-10-122-5/+8
* biology/star: Upgrade to 2.7.2dJason W. Bacon2019-10-062-6/+5
* biology/fastahack: Upgrade to 1.0.0Jason W. Bacon2019-10-062-7/+7
* biology/mothur: Update 1.42.3 -> 1.43.0Yuri Victorovich2019-10-052-6/+5
* biologi/ncbi-toolkit: Remove dependency on libXpNiclas Zeising2019-09-281-5/+4
* Deprecate x11/libXp, it is deprecated upstreamNiclas Zeising2019-09-271-1/+3
* biology/tophat: Fast splice junction mapper for RNA-Seq readsJason W. Bacon2019-09-279-0/+192
* Update devel/tbb to 2019.8 and bump dependent ports' revisionsGanael LAPLANCHE2019-09-251-0/+1
* biology/py-multiqc: Aggregate bioinformatics analysis reportsJason W. Bacon2019-09-236-0/+118
* devel/openmp: update to 9.0.0Jan Beich2019-09-213-3/+3
* biology/p5-TrimGalore: Upgrade to 0.6.4Jason W. Bacon2019-09-212-5/+5
* biology/fastqc: Upgrade to 0.11.8Jason W. Bacon2019-09-213-14/+12
* biology/diamond: Update to version 0.9.26Joseph Mingrone2019-09-182-4/+4
* Fix some misspelled or duplicated LICENSE_*Tobias Kortkamp2019-09-171-1/+1
* biology/haplohseq: Identify regions of allelic imbalanceJason W. Bacon2019-09-168-0/+185
* Deprecate a few portsAntoine Brodin2019-09-152-0/+4
* Drop C++11 workaround for GCC < 6 after r449590Jan Beich2019-09-142-36/+1
* biology/trimmomatic: Upgrade to 0.39Jason W. Bacon2019-09-144-4/+14
* biology/bedtools: Upgrade to 2.29.0Jason W. Bacon2019-09-135-49/+64
* biology/py-cutadapt: Upgrade to 2.5Jason W. Bacon2019-09-132-5/+6
* biology/phyml: update to 3.3.20190909Fernando Apesteguía2019-09-102-6/+6
* Update to 1.007006 (1.7.6)Sunpoet Po-Chuan Hsieh2019-09-073-19/+8
* Fix after gets(3) retirement using gets_s(3).Cy Schubert2019-09-021-1/+1
* Add a patch to remove use of gets(3)Li-Wen Hsu2019-09-012-0/+169
* biology/py-pysam: Update 0.15.2 -> 0.15.3Yuri Victorovich2019-08-312-4/+4
* biology/ngs-sdk: Update 2.9.6 -> 2.10.0Yuri Victorovich2019-08-314-13/+13
* biology/iqtree: Update to version 1.6.12Joseph Mingrone2019-08-272-5/+4
* biology/gperiodic: fix NLS and other rough edgesKurt Jaeger2019-08-232-30/+22
* devel/boost-*: update to 1.71.0Jan Beich2019-08-199-7/+9
* biology/checkm: Update 1.0.17 -> 1.0.18Yuri Victorovich2019-08-192-4/+4
* Convert to UCL & cleanup pkg-message (categories a-c)Mathieu Arnold2019-08-1313-32/+78
* biology/bolt-lmm: Upgrade to 2.3.4Jason W. Bacon2019-08-137-120/+63
* biology/checkm: Update 1.0.16 -> 1.0.17Yuri Victorovich2019-08-112-4/+4
* biology/gperiodic: upgrade 2.0.10 -> 3.0.3Kurt Jaeger2019-08-113-23/+39
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-08-113-20/+5
* Update WWWSunpoet Po-Chuan Hsieh2019-08-111-1/+1
* biology/checkm: Update 1.0.13 -> 1.0.16Yuri Victorovich2019-08-092-5/+4
* biology/hhsuite: fix build on powerpc64Piotr Kubaj2019-08-051-2/+7
* PR: 239613Jason W. Bacon2019-08-046-1/+94
* biology/diamond: Update to version 0.9.25Joseph Mingrone2019-08-042-4/+4
* Mark BROKEN: unfetchableAntoine Brodin2019-08-043-0/+6
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2019-07-2650-32/+50
* biology/gatk: Update 4.0.11.0 -> 4.1.2.0-43Yuri Victorovich2019-07-262-12/+31
* - Update WWWDmitry Marakasov2019-07-251-1/+1
* Prepare for devel/gradle4 and java/openjfx8-devel updatesTobias Kortkamp2019-07-231-2/+2
* biology/treekin: fix build on GCC architecturesPiotr Kubaj2019-07-191-1/+2
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