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* go: Bump go124-dependent portsAdam Weinberger2025-05-215-5/+5
* lang/zig: Update to 0.14.0Fernando Apesteguía2025-05-211-0/+31
* biology/haplohseq: Update to 0.1.2.3Jason W. Bacon2025-05-208-246/+7
* biology/lamarc: New maintainer hayzam@alchemilla.ioJason W. Bacon2025-05-201-1/+1
* biology/lamarc: Unbreak build on 14.xJason W. Bacon2025-05-207-8/+69
* biology/bamtools: Update to 2.5.3Jason W. Bacon2025-05-194-7/+7
* biology/libsbml: Update to 5.20.5Po-Chuan Hsieh2025-05-194-21/+43
* devel/grpc: Update to 1.72.0Po-Chuan Hsieh2025-05-181-1/+1
* biology/vcftools: Update to 0.1.17Jason W. Bacon2025-05-152-8/+6
* biology/kallisto: Unbreak build on 15-CURRENTJason W. Bacon2025-05-152-7/+18
* biology/bifrost: Unbreak build on 15-CURRENTJason W. Bacon2025-05-152-3/+14
* biology/hyphy: Update to 2.5.73Joseph Mingrone2025-05-143-5/+12
* biology/paml: Update to 4.10.9Joseph Mingrone2025-05-144-13/+13
* biology/fasda-utils: Update to 0.1.0.2Jason W. Bacon2025-05-052-5/+5
* biology/fastq-trim: Update to 0.1.4Jason W. Bacon2025-04-302-10/+7
* biology/fasda-utils: Update to 0.1.0.1Jason W. Bacon2025-04-282-4/+5
* biology/vcflib: Update to 1.0.13Jason W. Bacon2025-04-284-15/+25
* biology/R-cran-BiocManager: Return to poolMuhammad Moinur Rahman2025-04-271-1/+1
* biology/biolibc-tools: Update to 0.1.5Jason W. Bacon2025-04-262-6/+4
* biology/fasda: Update to 0.2.0Jason W. Bacon2025-04-263-10/+7
* biology/biolibc: Update to 0.2.7Jason W. Bacon2025-04-263-5/+6
* biology/{,py-}libsedml: update 2.0.32 → 2.0.33Yuri Victorovich2025-04-246-22/+16
* biology/py-orange3-single-cell: fix typo in DEPRECATEDRene Ladan2025-04-211-1/+1
* */*orange*: expire (in)direct consumers of misc/py-dictdiffer on 2025-06-21Rene Ladan2025-04-212-1/+4
* biology/minimap2: Update to 2.29Jason W. Bacon2025-04-203-9/+14
* biology/fastp: Update to 0.24.1Jason W. Bacon2025-04-173-23/+16
* biology/R-cran-Biobase: Update to 2.66.0Wen Heping2025-04-112-5/+5
* biology/R-cran-BiocGenerics: Update to 0.52.0Wen Heping2025-04-112-5/+5
* Mk/Uses/python.mk: Introduce USE_PYTHON=cython3{,_run,_test}Po-Chuan Hsieh2025-04-094-11/+7
* lang/rust: Bump revisions after 1.86.0Mikael Urankar2025-04-081-1/+1
* biology/fasda-utils: Fast and simple differential analysis extrasJason W. Bacon2025-04-064-0/+41
* biology/py-resdk: update 21.2.1 → 22.0.0Yuri Victorovich2025-04-022-4/+6
* go: Bump ports for go124 updateAdam Weinberger2025-04-025-3/+5
* biology/checkm: expire on 2025-06-01 for science/py-DendroPyRene Ladan2025-03-311-0/+3
* biology/py-orange3-single-cell: expire on 2025-06-01 for math/py-fastdtwRene Ladan2025-03-311-0/+3
* biology/{,py-}libnuml: update 1.1.6 → 1.1.7Yuri Victorovich2025-03-287-22/+35
* biology/subread: Update to 2.1.0Jason W. Bacon2025-03-272-4/+4
* biology/seaview: Update version 5.0.5=>5.1Muhammad Moinur Rahman2025-03-262-16/+16
* biology/bwa: update 0.7.18 => 0.7.19Älven2025-03-263-7/+7
* biology/hyphy: Update to 2.5.70Joseph Mingrone2025-03-242-5/+4
* biology/py-newick: Update to 1.10.0Wen Heping2025-03-222-5/+4
* biology/sra-tools: Update to 3.2.1Jason W. Bacon2025-03-213-45/+47
* biology/py-macs3: Unbreak package buildJason W. Bacon2025-03-191-1/+1
* biology/rubygem-bio: Update to 2.0.6Po-Chuan Hsieh2025-03-192-4/+4
* gnome.mk: rename gdkpixbuf2 to gdkpixbuf to prepare for port moveCharlie Li2025-03-171-1/+1
* biology/seqkit: update 2.9.0 → 2.10.0Yuri Victorovich2025-03-132-10/+10
* biology/taxonkit: update 0.18.0 → 0.19.0Yuri Victorovich2025-03-132-7/+6
* biology/ncbi-cxx-toolkit: Broken on i386Yuri Victorovich2025-03-101-0/+1
* python: bump all USE_PYTHON=distutils consumers after RUN_DEPENDS removalCharlie Li2025-03-0837-9/+37
* biology/py-macs3: Update to 3.0.3Jason W. Bacon2025-03-074-17/+21
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