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* biology/paml: Set PORTVERSION directlyJoseph Mingrone2018-04-261-1/+1
* biology/canu: Upgrade to 1.7 releaseJason W. Bacon2018-04-265-37/+51
* biology/paml: Update to version 4.9hJoseph Mingrone2018-04-253-27/+181
* Switch all pypi.python.org WWWs to a new PyPi home pypi.org whereDmitry Marakasov2018-04-252-2/+2
* biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon2018-04-2411-0/+146
* biology/seaview: Update version 4.6.3=>4.6.5Muhammad Moinur Rahman2018-04-242-6/+8
* biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon2018-04-236-0/+133
* biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon2018-04-235-0/+182
* biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon2018-04-215-0/+698
* biology/diamond: Update to version 0.9.21Joseph Mingrone2018-04-202-5/+4
* biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon2018-04-208-0/+617
* biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon2018-04-2014-0/+293
* biology/bedtools: Upgrade to 2.27.1Jason W. Bacon2018-04-196-54/+36
* devel/boost-*: update to 1.67.0Jan Beich2018-04-182-1/+2
* biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon2018-04-178-0/+511
* biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon2018-04-166-0/+99
* biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon2018-04-156-0/+149
* biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon2018-04-145-0/+131
* - Update to 1.71Wen Heping2018-04-092-5/+4
* biology/pear-merger: Memory-efficient and accurate paired-end read mergerJason W. Bacon2018-04-044-0/+37
* biology/seqtk: Tool for processing sequences in FASTA/FASTQ formatJason W. Bacon2018-04-035-0/+51
* biology/trimadap: Trim adapter sequences from Illumina dataJason W. Bacon2018-04-036-0/+65
* biology/rainbow: Efficient clustering and assembling of short readsJason W. Bacon2018-04-025-0/+50
* - Update to 1.61Wen Heping2018-04-012-6/+7
* biology/stacks: Software pipeline for building loci from short-read sequencesJason W. Bacon2018-03-317-0/+136
* biology/libgtextutils: Unbreak for FreeBSD 12Jason W. Bacon2018-03-292-1/+12
* biology/bamtools: API and toolkit for handling BAM filesJason W. Bacon2018-03-287-0/+76
* biology/ncbi-blast+: Upgrade to 2.7.1Jason W. Bacon2018-03-276-377/+409
* biology/iqtree: Update to version 1.6.3Joseph Mingrone2018-03-232-5/+4
* biology/py-pysam: Update to 0.14.1Yuri Victorovich2018-03-212-5/+5
* Mark broken on armvX and mips.Mark Linimon2018-03-181-0/+4
* Mark the latest version broken on armvX. Note: 2.1.8.3 built ok.Mark Linimon2018-03-181-0/+3
* biology/diamond: Update to version 0.9.19Joseph Mingrone2018-03-172-5/+4
* biology/diamond: Update to version 0.9.18-49Joseph Mingrone2018-03-152-4/+5
* Return maho@'s ports to the pool after his commit bit expired.Rene Ladan2018-03-111-1/+1
* Remove now-useless, commented-out lines.Mark Linimon2018-03-101-4/+0
* Bump PORTREVISIONs of all users of math/mpc that we just updated toGerald Pfeifer2018-03-1021-15/+21
* biology/seqan-apps, biology/seqan: Update to 2.4.0Yuri Victorovich2018-03-107-1269/+90
* biology/iqtree: Update to version 1.6.2Joseph Mingrone2018-03-032-5/+4
* Reduce dependency on the python2 metaportAntoine Brodin2018-02-191-1/+2
* biology/py-pysam: Update to 0.14Yuri Victorovich2018-02-102-4/+4
* biology/py-bx-python: Update to 0.8.1Yuri Victorovich2018-02-102-8/+9
* Canonicalize PyPi WWWs:Dmitry Marakasov2018-02-081-1/+1
* biology/diamond: Update to version 0.9.17Joseph Mingrone2018-02-012-4/+4
* - Update to 3.3.20180129Wen Heping2018-02-012-5/+4
* Multiple ports:Jason W. Bacon2018-01-3116-29/+16
* devel/boost-*: update to 1.66.0Jan Beich2018-01-182-1/+2
* - Convert to option helper install target (add OPTIONS_DEFINE=DOCSAlexey Dokuchaev2018-01-111-2/+4
* Update Qt5 ports to 5.9.3.Raphael Kubo da Costa2018-01-061-0/+10
* biology/seaview: Update version 4.6.2=>4.6.3Muhammad Moinur Rahman2018-01-053-7/+8
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