aboutsummaryrefslogtreecommitdiff
path: root/biology
Commit message (Expand)AuthorAgeFilesLines
* Use PY_FLAVOR for dependencies.Mathieu Arnold2018-06-206-13/+13
* Mark as broken on powerpc64 pending fix for PR 199603.Mark Linimon2018-06-181-0/+2
* Adjust USES to fix builds on gcc-based architectures.Mark Linimon2018-06-181-1/+1
* Mark ports broken on powerpc64, categories a-c.Mark Linimon2018-06-181-3/+4
* biology/bedtools: Fix Makefile to respect PREFIXJason W. Bacon2018-06-162-0/+22
* New port: biology/py-orange3-bioinformatics: Orange add-on providing common f...Yuri Victorovich2018-06-144-0/+41
* biology/py-Genesis-PyAPI: Remove stray USES=fortranYuri Victorovich2018-06-131-1/+1
* New port: biology/py-Genesis-PyAPI: API for the Genesis platform for genetics...Yuri Victorovich2018-06-134-0/+29
* biology/artemis: Update 9 -> 17.0.1-11Yuri Victorovich2018-06-114-1719/+72
* New port: biology/ngs-sdk: Tools and libraries for using data in the INSDC Se...Yuri Victorovich2018-06-109-0/+256
* Remove expired ports:Rene Ladan2018-06-0751-1777/+0
* Update to 2.0.0 and pass maintainership to committer.Kirill Ponomarev2018-06-068-345/+121
* Add new port: biology/infernalKirill Ponomarev2018-06-066-0/+117
* Mark as broken on powerpc64. The entire, unhelpful, error message is:Mark Linimon2018-06-031-0/+2
* Adjust USES to fix building on gcc-based archs (in particular, powerpc64).Mark Linimon2018-06-021-1/+1
* Update WWWSunpoet Po-Chuan Hsieh2018-05-2713-13/+13
* biology/hyphy: Update to version 2.3.13Joseph Mingrone2018-05-223-5/+10
* biology/clustal-omega: Multiple alignment of nucleic acid and protein, replac...Jason W. Bacon2018-05-215-0/+64
* biology/clustalx: Multiple alignment of nucleic acid and protein sequences wi...Jason W. Bacon2018-05-215-0/+59
* biology/clustalw: Fix license, take maintainershipJason W. Bacon2018-05-212-5/+6
* biolog/molden: unbreak after at least two intransparent distfile updatesJohannes M Dieterich2018-05-202-6/+4
* biology/fastx-toolkit: Fix build on FreeBSD 12Jason W. Bacon2018-05-162-2/+19
* Add upstream patch to fix the build with Qt 5.10.Raphael Kubo da Costa2018-05-152-1/+31
* - Update to 3.3.20180214Wen Heping2018-05-152-5/+6
* biology/diamond: Update to version 0.9.22Joseph Mingrone2018-05-142-4/+4
* biology/hyphy: Bump PORTREVISION after upstream rerolled releaseJoseph Mingrone2018-05-143-14/+4
* biology/py-biopython: Unbreak on python3; Add licenseYuri Victorovich2018-05-131-2/+9
* biology/iqtree: Update to version 1.6.5Joseph Mingrone2018-05-112-4/+4
* New port, biology/hyphy: Hypothesis testing using PhylogeniesJoseph Mingrone2018-05-117-0/+645
* Mark BROKEN: checksum and size mismatchAntoine Brodin2018-05-071-0/+2
* Deprecate ports broken for more than 6 monthsAntoine Brodin2018-05-055-0/+10
* biology/iqtree: Update to version 1.6.4Joseph Mingrone2018-04-302-4/+4
* biology/paml: Set PORTVERSION directlyJoseph Mingrone2018-04-261-1/+1
* biology/canu: Upgrade to 1.7 releaseJason W. Bacon2018-04-265-37/+51
* biology/paml: Update to version 4.9hJoseph Mingrone2018-04-253-27/+181
* Switch all pypi.python.org WWWs to a new PyPi home pypi.org whereDmitry Marakasov2018-04-252-2/+2
* biology/unanimity: Pacific Biosciences consensus library and applicationsJason W. Bacon2018-04-2411-0/+146
* biology/seaview: Update version 4.6.3=>4.6.5Muhammad Moinur Rahman2018-04-242-6/+8
* biology/pbcopper: Core C++ library for Pacific Biosciences toolsJason W. Bacon2018-04-236-0/+133
* biology/pbbam: PacBio BAM C++ library, with SWIG bindingsJason W. Bacon2018-04-235-0/+182
* biology/pbseqan: Pacific Biosciences patched and stripped down SeqAnJason W. Bacon2018-04-215-0/+698
* biology/diamond: Update to version 0.9.21Joseph Mingrone2018-04-202-5/+4
* biology/ddocent: Bash pipeline for RAD sequencingJason W. Bacon2018-04-208-0/+617
* biology/freebayes: Bayesian haplotype-based polymorphism discovery and genoty...Jason W. Bacon2018-04-2014-0/+293
* biology/bedtools: Upgrade to 2.27.1Jason W. Bacon2018-04-196-54/+36
* devel/boost-*: update to 1.67.0Jan Beich2018-04-182-1/+2
* biology/vcflib: C++ library and CLI tools for parsing and manipulating VCF filesJason W. Bacon2018-04-178-0/+511
* biology/fastahack: Utility for indexing and sequence extraction from FASTA filesJason W. Bacon2018-04-166-0/+99
* biology/smithwaterman: Smith-waterman-gotoh alignment algorithmJason W. Bacon2018-04-156-0/+149
* biology/tabixpp: C++ wrapper to tabix indexerJason W. Bacon2018-04-145-0/+131
generated by cgit v1.2.3 (git 2.25.1) at 2024-07-04 13:06:25 +0000