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* biology/seaview: unbreak the port's build against FLTK 1.3.10Alexey Dokuchaev9 days1-0/+3
* biology/pooler: Update to 1.89Wen Heping14 days2-6/+6
* biology/infernal: update 1.1.4 → 1.1.5Älven2025-01-303-14/+17
* biology/sra-tools: Update to 3.2.0Jason W. Bacon2025-01-296-52/+88
* biology/fermi-lite: enable on powerpc64lePiotr Kubaj2025-01-291-2/+2
* biology/metaeuk: builds now fine on powerpc64lePiotr Kubaj2025-01-291-2/+1
* biology/trimadap: drop not necessary powerpc64le knobPiotr Kubaj2025-01-291-1/+0
* biology/hyphy: Update to 2.5.68Joseph Mingrone2025-01-282-4/+4
* biology/hyphy: Update to 2.5.67Joseph Mingrone2025-01-282-4/+4
* biology/hyphy: Update to 2.5.66Joseph Mingrone2025-01-282-5/+4
* biology/hyphy: Update to 2.5.65Joseph Mingrone2025-01-282-5/+6
* devel/grpc: Update to 1.69.0Po-Chuan Hsieh2025-01-281-0/+1
* */*: bump PORTREVISION after OpenBLAS upgradeThierry Thomas2025-01-284-3/+4
* biology/mummer: update 4.0.0rc1.20240427 → 4.0.0Yuri Victorovich2025-01-273-47/+51
* biology/diamond: Update to 2.1.11Joseph Mingrone2025-01-252-4/+4
* biology/mmseqs2: Update to 17.b804.fJason W. Bacon2025-01-252-6/+6
* */*: bump PORTREVISION to chase blas/lapack, Suitesparse and BLISThierry Thomas2025-01-242-1/+2
* biology/stacks: fix build without libompPiotr Kubaj2025-01-221-1/+6
* lang/rust: Bump revisions after 1.84.0Mikael Urankar2025-01-201-1/+1
* biology/subread: Update to 2.0.8Jason W. Bacon2025-01-193-14/+18
* biology/libbigwig: update 0.4.7 → 0.4.8Yuri Victorovich2025-01-182-5/+5
* biology/stacks: Update to 2.68Jason W. Bacon2025-01-173-18/+12
* biology/py-bcbio-gff: Update to 0.7.1Jason W. Bacon2025-01-163-5/+14
* biology/bbmap: Update to 39.15Jason W. Bacon2025-01-163-5/+16
* biology/mmseqs2: Update to 16.747.c6Jason W. Bacon2025-01-157-65/+50
* biology/ncbi-blast+: Update to 2.16.0Jason W. Bacon2025-01-143-27/+34
* biology/py-scikit-bio: update 0.6.2 → 0.6.3Yuri Victorovich2025-01-142-6/+11
* biology/bbmap: Update to 39.14Jason W. Bacon2025-01-134-65/+442
* */*: bump PORTREVISION after the upgrade to SuitesparseThierry Thomas2025-01-113-1/+3
* biology/py-cutadapt: Update to 5.0Philippe Audeoud2025-01-102-4/+4
* biology/ncbi-cxx-toolkit: update 28.0.11 → 28.0.12Yuri Victorovich2025-01-072-4/+4
* biology/bwa: small improvementsÄlven2025-01-061-2/+4
* biology/unikmer: Update WWWYuri Victorovich2025-01-061-1/+2
* biology/py-scikit-bio: Broken where OpenMP isn't availableYuri Victorovich2025-01-041-0/+3
* all: remove support for expired FreeBSD 13.3Rene Ladan2025-01-011-1/+1
* biology/ncbi-vdb: Remove expired portRene Ladan2025-01-0131-984/+0
* biology/coverm: fix build with char being unsignedPiotr Kubaj2024-12-311-0/+20
* Mk/**java.mk: Convert bsd.java.mk to USESMuhammad Moinur Rahman2024-12-3117-35/+17
* biology/vsearch: Update to 2.29.2Jason W. Bacon2024-12-292-4/+4
* Mk/bsd.commands.mk: Use absolute path to define GMAKETijl Coosemans2024-12-291-1/+1
* */*: bump PORTREVISION following sse2neon updateRobert Clausecker2024-12-261-0/+1
* */*: Use Gnome helper for defining libxml2 dependencyDaniel Engberg2024-12-231-3/+3
* biology/py-dnaio: Update to 1.2.3Wen Heping2024-12-202-6/+7
* biology/seqwish: Broken on 13Yuri Victorovich2024-12-201-0/+1
* biology/coverm: Broken on arm64Yuri Victorovich2024-12-161-0/+1
* biology/py-bx-python: update 0.11.0 → 0.13.0Yuri Victorovich2024-12-152-6/+8
* biology/checkm: update 1.2.2 → 1.2.3Älven2024-12-153-15/+17
* biology/py-multiqc: Add missing py-natsort RUN_DEPENDJason W. Bacon2024-12-121-1/+3
* biology/seqwish: disable march=native, fixing build on non-x86Piotr Kubaj2024-12-112-1/+27
* biology/hyphy: Update to 2.5.64Älven2024-12-103-9/+12
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