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* Mark several ports newly broken on arm.Mark Linimon2017-12-112-3/+9
* biology/py-biom-format: Add required dependency on math/py-pandas and doJoseph Mingrone2017-12-101-3/+7
* [new port] biology/p5-TrimGalore: Wrapper around Cutadapt and FastQC for adap...Jason W. Bacon2017-12-095-0/+47
* These are also broken on aarch64 in the same way as armv6/7.Mark Linimon2017-12-091-0/+1
* Mark more ports broken that fail on both armv6 and armv7.Mark Linimon2017-12-091-0/+3
* Revert previous fat-fingered commit. These are the error messages fromMark Linimon2017-12-081-2/+2
* Update errror message on armvX.Mark Linimon2017-12-081-2/+2
* biology/fasttree: update to version 2.1.10Jason W. Bacon2017-12-054-19/+45
* biology/py-macs2: Restrict to python 2.7.Jason W. Bacon2017-12-051-2/+2
* Add a USES=python:env, that will not add a dependency on Python.Mathieu Arnold2017-12-042-4/+2
* Fix configure options for gnustep-makeDavid Chisnall2017-12-031-1/+1
* [new port] biology/py-macs2: Analysis of chromatin immunoprecipitation (ChIP)...Jason W. Bacon2017-12-024-0/+41
* [new port] biology/kallisto: Quantify abundances of transcripts from RNA-Seq ...Jason W. Bacon2017-12-025-0/+91
* Fix packaging with python3Antoine Brodin2017-12-012-14/+14
* [unbreak] biology/bwa: Remove old patch filesJason W. Bacon2017-12-013-37/+0
* [new port] biology/fastqc: Quality control tool for high throughput sequence ...Jason W. Bacon2017-11-305-0/+260
* biology/py-cutadapt: Remove MASTER_SITE_SUBDIR per mentor commentJason W. Bacon2017-11-301-1/+0
* Convert Python ports to FLAVORS.Mathieu Arnold2017-11-309-17/+15
* For ports that are marked BROKEN on armv6, and also fail to build onMark Linimon2017-11-305-0/+5
* biology/bowtie2: Upgrade to 2.3.3.1Jason W. Bacon2017-11-305-50/+19
* [new port] biology/py-cutadapt: Finds and removes adapter sequences, primers, poJason W. Bacon2017-11-295-0/+74
* biology/bwa: Upgrade to 0.7.17Jason W. Bacon2017-11-282-5/+10
* biology/vcftools: Upgrade to latest release 0.1.15Jason W. Bacon2017-11-272-4/+4
* - Switch to options helpersDmitry Marakasov2017-11-261-1/+5
* biology/diamond: Update to version 0.9.13Joseph Mingrone2017-11-172-4/+4
* - Update to 3.1b2Wen Heping2017-11-115-39/+69
* Fix the context of some patches so that they apply with stricter patch(1)Antoine Brodin2017-11-092-6/+6
* biology/diamond: Update to version 0.9.12Joseph Mingrone2017-11-082-7/+5
* Fix USE_GITHUB usage.Mathieu Arnold2017-11-062-5/+4
* biology/py-pysam: Update to 0.13Yuri Victorovich2017-11-052-6/+8
* biology/diamond: Update to 0.9.11Joseph Mingrone2017-11-033-10/+14
* biology/molden: chase another intransparent upstream distfile upgrade.Johannes M Dieterich2017-11-012-4/+4
* - Fix installing scripts and support binariesWen Heping2017-10-304-8/+39
* Update biology/py-pysam to 0.12.0.1Tobias C. Berner2017-10-262-4/+4
* biology/htslib biology/bcftools biology/samtools: Update to 1.6Luca Pizzamiglio2017-10-2525-897/+171
* biology/iqtree: Add EXAMPLES option and fix mess with installation ofJoseph Mingrone2017-10-211-1/+13
* New port, biology/iqtree: Efficient phylogenomic softwareJoseph Mingrone2017-10-214-0/+43
* Mark as broken ports with no public distfilesBaptiste Daroussin2017-10-136-1/+10
* Remove dead master sitesBaptiste Daroussin2017-10-132-2/+3
* biology/molden: unbreak by chasing latest intransparent distfile update.Johannes M Dieterich2017-09-282-4/+4
* devel/boost-*: update to 1.65.1Jan Beich2017-09-251-1/+1
* devel/boost-*: enable C++11 featuresJan Beich2017-09-251-1/+1
* biology/ssaha: unbreak with gcc7Jan Beich2017-09-241-0/+9
* Remove USES=execinfo.Mathieu Arnold2017-09-222-2/+2
* Update tbb to 2018 and bump dependent ports' revisionsGanael LAPLANCHE2017-09-171-1/+1
* Update to 1.007002Sunpoet Po-Chuan Hsieh2017-09-153-23/+5
* Add p5-Bio-FeatureIO 1.6.905Sunpoet Po-Chuan Hsieh2017-09-155-0/+67
* Fix license information for portgs that use "the same license as Perl".Mathieu Arnold2017-09-1510-10/+10
* - Update to 1.007002Wen Heping2017-09-133-15/+4
* Bump PORTREVISION for ports depending on the canonical version of GCCGerald Pfeifer2017-09-1015-15/+15
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