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* biology/paml: Update to version 4.9iJoseph Mingrone2019-02-263-4/+6
* New port: biology/abyss: Assembly By Short Sequences: parallel, paired-end se...Yuri Victorovich2019-02-256-0/+116
* kallisto: Upgrade to 0.45.1, unbundle hstlibJason W. Bacon2019-02-245-16/+65
* biology/unanimity: Upgrade to 3.4.1Jason W. Bacon2019-02-243-5/+5
* biology/ngs-sdk: Update 2.9.3 -> 2.9.4Yuri Victorovich2019-02-233-5/+5
* biology/igv: Update 2.4.16 -> 2.4.19Yuri Victorovich2019-02-232-6/+6
* biology/unanimity is not compatible with python 3.xAntoine Brodin2019-02-222-2/+2
* Update to 1.007005 (1.7.5)Sunpoet Po-Chuan Hsieh2019-02-223-17/+2
* biology/iqtree: Update to version 1.6.10Joseph Mingrone2019-02-212-5/+4
* Update to 1.007003Sunpoet Po-Chuan Hsieh2019-02-204-67/+16
* Update to 1.007004 (1.7.4)Sunpoet Po-Chuan Hsieh2019-02-205-998/+189
* Add p5-Bio-Cluster 1.7.3Sunpoet Po-Chuan Hsieh2019-02-205-0/+55
* biology/pbseqan: Mark deprecatedJason W. Bacon2019-02-201-0/+2
* biology/unanimity: Upgrade to 3.4.0Jason W. Bacon2019-02-2010-70/+133
* biology/pbbam: Upgrade to 0.18.0 releaseJason W. Bacon2019-02-194-23/+47
* biology/pbcopper: Upgrade to 0.4.1 releaseJason W. Bacon2019-02-195-38/+26
* vec_splats function is not supported by base GCC. Add USES=compiler:c11Mark Linimon2019-02-181-2/+2
* biology/pbseqan: Minor upgrade to latest commitJason W. Bacon2019-02-172-6/+6
* Update dns/libidn2 to 2.1.1Sunpoet Po-Chuan Hsieh2019-02-092-2/+2
* biology/checkm: Update 1.0.12 -> 1.0.13Yuri Victorovich2019-02-092-5/+4
* - Update WWWDmitry Marakasov2019-02-071-1/+1
* biology/dsr-pdb: Correct typoYuri Victorovich2019-02-051-1/+1
* biology/dsr-pdb: Add c++11 flags because boost isn't found without itYuri Victorovich2019-02-053-2/+25
* New port: biology/figtree: Graphical viewer of phylogenetic treesYuri Victorovich2019-02-034-0/+49
* New port: biology/graphlan: High-quality circular representations of taxonomi...Yuri Victorovich2019-02-035-0/+127
* New port: biology/prodigy-lig: Prediction of protein-small molecule binding a...Yuri Victorovich2019-02-034-0/+34
* New port: biology/prodigal: Protein-coding gene prediction for prokaryotic ge...Yuri Victorovich2019-02-034-0/+51
* Move Objective-C ports to the v2 GNUstep ABI.David Chisnall2019-02-031-1/+1
* biology/py-loompy: Update 2.0.16 -> 2.0.17Yuri Victorovich2019-02-022-5/+5
* New port: biology/dsr-pdb: Simple C++ PDB reader (reads the protein descripti...Yuri Victorovich2019-01-299-0/+122
* biology/py-pysam: Update 0.15.1 -> 0.15.2Yuri Victorovich2019-01-262-4/+4
* Sort categories Makefiles.Mathieu Arnold2019-01-221-1/+1
* Fix Qt5 symbol version scripts to put the catch-all clause first. WhenTijl Coosemans2019-01-163-2/+3
* biology/stacks: Upgrade to 2.3Jason W. Bacon2019-01-124-38/+14
* New port: biology/hisat2: Program for mapping next-generation sequencing readsJason W. Bacon2019-01-117-0/+577
* Fixup bulk -a errors with BUILD_ALL_PYTHON_FLAVORS=yes.Mathieu Arnold2019-01-111-1/+2
* biology/seqtools: fix build on current, if lld is lld7Kurt Jaeger2019-01-071-0/+1
* biology/groopm fails to build with python3Antoine Brodin2019-01-071-1/+1
* Update dns/libidn2 to 2.1.0Sunpoet Po-Chuan Hsieh2019-01-062-0/+2
* Update science/hdf5 to 1.10.4Sunpoet Po-Chuan Hsieh2019-01-051-1/+1
* biology/ncbi-blast+: Upgrade to 2.8.1Jason W. Bacon2019-01-014-32/+244
* biology/diamond: Update to version 0.9.24Joseph Mingrone2018-12-314-27/+12
* biology/iqtree: switch to outsource cmake buildJoseph Mingrone2018-12-271-2/+2
* Update math/eigen3 to 3.3.7Tobias C. Berner2018-12-261-0/+1
* Change cmake default behaviour to outsource.Tobias C. Berner2018-12-258-8/+8
* biology/iqtree: Update to version 1.6.9Joseph Mingrone2018-12-232-5/+4
* - Update to 1.73Wen Heping2018-12-222-5/+4
* Remove expired ports:Rene Ladan2018-12-214-57/+0
* biology/gff2ps: update 0.98d to 0.98lVinícius Zavam2018-12-192-5/+5
* biology/diamond: Update to 0.9.23 plus fixes after releaseJoseph Mingrone2018-12-173-10/+11
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