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* */*: Bump PORTREVISION after math/nlopt updateRainer Hurling2 days1-1/+1
* lang/rust: Bump revisions after 1.85.0Mikael Urankar7 days1-1/+1
* biology/seqwish: Set OPENMP=OFF and broken where OpenMP isn't availableYuri Victorovich8 days1-0/+4
* Multiple biology ports: Replace pypi homepage with githubJason W. Bacon10 days7-9/+7
* biology/freebayes: Update to 1.3.9Jason W. Bacon13 days3-54/+101
* biology/py-orange3-bioinformatics: Update 4.3.1 → 4.8.4Älven13 days2-8/+7
* biology/tabixpp: Undeprecate and update to 1.1.2Jason W. Bacon13 days2-5/+5
* biology/tabixpp: Update to 1.1.2Jason W. Bacon13 days2-8/+4
* biology/vsearch: Update to 2.29.4Jason W. Bacon2025-02-162-4/+4
* biology/py-biopython: Update 1.83 => 1.85wen2025-02-152-4/+4
* biology/gatk: Update WWWYuri Victorovich2025-02-141-1/+2
* biology/linux-foldingathome: Update to 8.4.9.Alexander Leidinger2025-02-146-20/+92
* devel/boost: bump consumers after Boost-1.87 updateDima Panov2025-02-148-7/+8
* biology/haplohseq: mark as BROKEN with Boost>=1.87 (+)Dima Panov2025-02-141-0/+2
* biology/iqtree: Update to 2.4.0Joseph Mingrone2025-02-123-11/+22
* biology/mummer: update 4.0.0 → 4.0.1Yuri Victorovich2025-02-083-43/+50
* devel/grpc: Update to 1.70.1Po-Chuan Hsieh2025-02-071-1/+1
* biology/py-pysam: update 0.22.1 → 0.23.0Yuri Victorovich2025-02-062-4/+6
* biology/gatk: Fix build breakage after gradle update to 8.12.1Yuri Victorovich2025-02-061-3/+3
* biology/seaview: unbreak the port's build against FLTK 1.3.10Alexey Dokuchaev2025-02-051-0/+3
* biology/pooler: Update to 1.89Wen Heping2025-02-012-6/+6
* biology/infernal: update 1.1.4 → 1.1.5Älven2025-01-303-14/+17
* biology/sra-tools: Update to 3.2.0Jason W. Bacon2025-01-296-52/+88
* biology/fermi-lite: enable on powerpc64lePiotr Kubaj2025-01-291-2/+2
* biology/metaeuk: builds now fine on powerpc64lePiotr Kubaj2025-01-291-2/+1
* biology/trimadap: drop not necessary powerpc64le knobPiotr Kubaj2025-01-291-1/+0
* biology/hyphy: Update to 2.5.68Joseph Mingrone2025-01-282-4/+4
* biology/hyphy: Update to 2.5.67Joseph Mingrone2025-01-282-4/+4
* biology/hyphy: Update to 2.5.66Joseph Mingrone2025-01-282-5/+4
* biology/hyphy: Update to 2.5.65Joseph Mingrone2025-01-282-5/+6
* devel/grpc: Update to 1.69.0Po-Chuan Hsieh2025-01-281-0/+1
* */*: bump PORTREVISION after OpenBLAS upgradeThierry Thomas2025-01-284-3/+4
* biology/mummer: update 4.0.0rc1.20240427 → 4.0.0Yuri Victorovich2025-01-273-47/+51
* biology/diamond: Update to 2.1.11Joseph Mingrone2025-01-252-4/+4
* biology/mmseqs2: Update to 17.b804.fJason W. Bacon2025-01-252-6/+6
* */*: bump PORTREVISION to chase blas/lapack, Suitesparse and BLISThierry Thomas2025-01-242-1/+2
* biology/stacks: fix build without libompPiotr Kubaj2025-01-221-1/+6
* lang/rust: Bump revisions after 1.84.0Mikael Urankar2025-01-201-1/+1
* biology/subread: Update to 2.0.8Jason W. Bacon2025-01-193-14/+18
* biology/libbigwig: update 0.4.7 → 0.4.8Yuri Victorovich2025-01-182-5/+5
* biology/stacks: Update to 2.68Jason W. Bacon2025-01-173-18/+12
* biology/py-bcbio-gff: Update to 0.7.1Jason W. Bacon2025-01-163-5/+14
* biology/bbmap: Update to 39.15Jason W. Bacon2025-01-163-5/+16
* biology/mmseqs2: Update to 16.747.c6Jason W. Bacon2025-01-157-65/+50
* biology/ncbi-blast+: Update to 2.16.0Jason W. Bacon2025-01-143-27/+34
* biology/py-scikit-bio: update 0.6.2 → 0.6.3Yuri Victorovich2025-01-142-6/+11
* biology/bbmap: Update to 39.14Jason W. Bacon2025-01-134-65/+442
* */*: bump PORTREVISION after the upgrade to SuitesparseThierry Thomas2025-01-113-1/+3
* biology/py-cutadapt: Update to 5.0Philippe Audeoud2025-01-102-4/+4
* biology/ncbi-cxx-toolkit: update 28.0.11 → 28.0.12Yuri Victorovich2025-01-072-4/+4
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