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* biology/py-bx-python: update to 0.10.0Ruslan Makhmatkhanov2024-01-282-5/+4
* */*: bump PORTREVISION after the upgrade to SuiteSparseThierry Thomas2024-01-282-2/+2
* biology/htslib: Moved man to share/manMuhammad Moinur Rahman2024-01-272-7/+9
* biology/biolibc: Impelled to share/manMuhammad Moinur Rahman2024-01-232-472/+475
* biology/vsearch: Update to 2.27.0Jason W. Bacon2024-01-232-4/+4
* biology/py-pyrodigal: update 3.2.1 → 3.2.2Yuri Victorovich2024-01-212-4/+4
* biology/py-htseq: Fix build with python-3.11Wen Heping2024-01-211-2/+2
* biology/ncbi-cxx-toolkit: Broken on armv7Yuri Victorovich2024-01-211-0/+1
* biology/py-mrcfile: update 1.4.3 → 1.5.0Yuri Victorovich2024-01-202-5/+4
* biology/bowtie2: Update to 2.5.3Jason W. Bacon2024-01-182-4/+4
* biology/recombine: Remove expired portRene Ladan2024-01-186-268/+0
* biology/seqio: Remove expired portMuhammad Moinur Rahman2024-01-188-354/+0
* biology/sim4: Remove expired portMuhammad Moinur Rahman2024-01-184-40/+0
* biology/metaeuk: fix build on powerpc64le by disabling openmp until libomp is...Piotr Kubaj2024-01-161-2/+3
* */*: bump PORTREVISION after the upgrade of SuiteSparse to v7.5.0Thierry Thomas2024-01-132-2/+2
* biology/mashmap: Broken on armv7Yuri Victorovich2024-01-131-0/+1
* MANPREFIX: eliminate its usageBaptiste Daroussin2024-01-125-50/+51
* biology/metaeuk: Add to NOT_FOR_ARCHS, and correct BROKENxx linesYuri Victorovich2024-01-121-1/+2
* biology/metaeuk: Correct the reason in the BROKEN_xx lineYuri Victorovich2024-01-121-1/+1
* biology/metaeuk: Not for 32-bit architecturesYuri Victorovich2024-01-121-2/+1
* biology/metaeuk: Broken on i386, armv7, powerpc64Yuri Victorovich2024-01-121-0/+4
* biology/btllib: Temporarily not for non-64-bit architecturesYuri Victorovich2024-01-121-0/+2
* biology/atac-seq: Update to 0.2.0Jason W. Bacon2024-01-102-2/+8
* biology/py-macs3: Peak caller for TF binding sitesJason W. Bacon2024-01-108-0/+104
* MAN?PREFIX: eleminate its usage and move man to share/manBaptiste Daroussin2024-01-105-33/+32
* MAN[1-5]PREFIX: eleminate its usage and move man to share/manBaptiste Daroussin2024-01-094-22/+24
* biology/mashmap: update 3.1.2 → 3.1.3Yuri Victorovich2024-01-052-5/+8
* biology/ncbi-cxx-toolkit: update 27.0.0 → 28.0.0Yuri Victorovich2024-01-053-17/+6
* */*: chase the upgrade of BLAS / LAPACK to 3.12.0Thierry Thomas2024-01-012-1/+2
* lang/zig: update to 0.11.0Nathan Fisher2024-01-011-1/+1
* */*: chase the upgrade of SuiteSparseThierry Thomas2023-12-312-2/+2
* */*: Sunset 12.4-RELEASE/12-STABLE from ports treeMuhammad Moinur Rahman2023-12-314-12/+1
* biology/ucsc-userapps: Replace dependenciesMuhammad Moinur Rahman2023-12-301-2/+1
* biology/diamond: Fix build on main after import of clang 17Dimitry Andric2023-12-292-0/+15
* */*: Refactor with IGNORE_WITH_MYSQLMuhammad Moinur Rahman2023-12-291-1/+1
* biology/libbigwig: Fix name-clashing in roundupJason E. Hale2023-12-281-0/+29
* biology/p5-Bio-DB-NCBIHelper: Update to 1.7.8Po-Chuan Hsieh2023-12-252-5/+5
* biology/hyphy: Update to 2.5.58Joseph Mingrone2023-12-233-4/+6
* biology/taxonkit: update 0.15.0 → 0.15.1Yuri Victorovich2023-12-202-7/+6
* biology/py-pyrodigal: update 3.1.1 → 3.2.1Yuri Victorovich2023-12-202-4/+4
* biology/gatk: update 4.4.0.0 → 4.5.0.0Yuri Victorovich2023-12-182-8/+8
* biology/sim4: fix EXPIRATION_DATERene Ladan2023-12-181-1/+1
* biology/recombine: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-4/+8
* biology/seqio: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-7/+11
* biology/sim4: Mark DEPRECATEDMuhammad Moinur Rahman2023-12-171-0/+3
* biology/py-pybigwig: Update to 0.3.22Jason W. Bacon2023-12-163-4/+33
* biology/R-cran-Biobase: New portMuhammad Moinur Rahman2023-12-154-0/+24
* biology/R-cran-BiocGenerics: New portMuhammad Moinur Rahman2023-12-154-0/+21
* biology/R-cran-BiocManager: New portMuhammad Moinur Rahman2023-12-154-0/+22
* devel/grpc: Update to 1.60.0Po-Chuan Hsieh2023-12-141-0/+1
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