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* lang/rust: Bump revisions after 1.82.0Mikael Urankar2024-11-081-0/+1
* biology/biostar-tools: Update to 2.0Jason W. Bacon2024-11-086-20/+21
* biology/ucsc-userapps: Change license to MITJason W. Bacon2024-11-071-7/+3
* biology/ucsc-userapps: Update to 472Jason W. Bacon2024-11-079-29/+61
* biology/ncbi-vdb: Deprecate and set expiration date to 2024-12-31Daniel Engberg2024-11-061-0/+3
* biology/mothur: update 1.48.1 → 1.48.2Yuri Victorovich2024-11-052-4/+4
* biology/seqkit: update 2.8.2 → 2.9.0Älven2024-11-052-9/+8
* biology/taxonkit: update 0.17.0 → 0.18.0Älven2024-11-052-7/+6
* biology/abyss: update 2.3.9 → 2.3.10Älven2024-11-042-9/+10
* biology/ncbi-cxx-toolkit: Broken on 15 with clang-19; Update WWWYuri Victorovich2024-11-031-1/+3
* biology/fastani: Broken where OpenMP isn't available; Update WWWYuri Victorovich2024-11-031-1/+5
* biology/viennarna: Broken on 15Yuri Victorovich2024-11-021-1/+1
* biology/gatk: Update TEST_ENVYuri Victorovich2024-11-011-1/+3
* biology/viennarna: update 2.6.4 → 2.7.0Yuri Victorovich2024-11-014-48/+105
* biology/gatk: Update tests stats; Add dependencyYuri Victorovich2024-10-311-2/+4
* biology/mummer: update 4.0.0beta2-2 → 4.0.0rc1.20240427Yuri Victorovich2024-10-314-48/+63
* biology/gatk: update 4.6.0.0 → 4.6.1.0Yuri Victorovich2024-10-312-7/+6
* biology/exonerate: remove maintainer (email address gone)Robert Clausecker2024-10-281-1/+1
* biology/ncbi-vdb: remove maintainer (email address gone)Robert Clausecker2024-10-281-1/+1
* biology/hmmer: update to 3.4Robert Clausecker2024-10-283-8/+6
* biology/fermi-lite: port to armv7/aarch64Robert Clausecker2024-10-282-2/+20
* biology/vsearch: Update to 2.29.1Jason W. Bacon2024-10-272-4/+4
* biology/hyphy: Update to 2.5.62Joseph Mingrone2024-10-252-4/+4
* biology/diamond: Update to v2.1.10Joseph Mingrone2024-10-252-4/+4
* textproc/xerces-c3: Update to 3.3.0Po-Chuan Hsieh2024-10-251-0/+1
* biology/mca-calling: Core tools for mCA event callingJason W. Bacon2024-10-244-0/+34
* biology/py-dnaio: Update to 1.2.2Wen Heping2024-10-242-4/+4
* biology/vsearch: Update to 2.29.0Jason W. Bacon2024-10-214-4/+40
* biology/trimadap: Update to 0.1.4Jason W. Bacon2024-10-183-9/+21
* biology/prodigy-lig: update 1.1.2 → 1.1.3Yuri Victorovich2024-10-152-4/+5
* biology/ncbi-blast+: Fix build with grpc 1.67.0+Po-Chuan Hsieh2024-10-141-0/+26
* devel/grpc: Update to 1.67.0Po-Chuan Hsieh2024-10-141-1/+1
* biology/biosig: fix build with libc++ 19Dimitry Andric2024-10-111-5/+14
* biology/bio-mocha: Update to 1.20Jason W. Bacon2024-10-094-26/+24
* biology/bcf-score: Update to 1.20Jason W. Bacon2024-10-097-56/+42
* biology/bcftools: Update to 1.21Jason W. Bacon2024-10-094-22/+19
* biology/samtools: Update to 1.21Jason W. Bacon2024-10-092-5/+5
* biology/htslib: Update to 1.21Jason W. Bacon2024-10-095-13/+14
* biology/coverm: Broken on i386Yuri Victorovich2024-10-061-0/+2
* biology/ncbi-cxx-toolkit: update 28.0.8 → 28.0.9Yuri Victorovich2024-10-062-4/+4
* biology/coverm: New port: Read coverage calculator for metagenomicsYuri Victorovich2024-10-054-0/+768
* biology/prodigy-lig: update 1.1.1 → 1.1.2Yuri Victorovich2024-10-042-5/+8
* */*: bump consumers after devel/boost* updateDima Panov2024-10-039-8/+9
* all: drop support for expired FreeBSD 14.0Rene Ladan2024-10-015-9/+5
* biology/fastani: New port: Fast Whole-Genome Similarity (ANI) EstimationYuri Victorovich2024-09-216-0/+60
* biology/kallisto: Update to 0.51.1,1Jason W. Bacon2024-09-192-4/+4
* biology/fermi-lite: Add ONLY_FOR_ARCHS lineYuri Victorovich2024-09-191-1/+5
* devel/grpc: Update to 1.66.1Po-Chuan Hsieh2024-09-151-1/+1
* biology/py-macs3: Update to 3.0.2Jason W. Bacon2024-09-145-30/+21
* */*: Bump dependencioes after devel/jsoncpp updateYuri Victorovich2024-09-121-1/+1
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