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* biology/diamond: Update to version 2.0.2Joseph Mingrone2020-08-073-4/+49
* biology/py-gtfparse: Update 1.2.0 -> 1.2.1Yuri Victorovich2020-08-072-5/+4
* biology/samtools: Upgrade to 1.10Jason W. Bacon2020-08-035-22/+68
* biology/bcftools: Upgrade to 1.10.2Jason W. Bacon2020-08-036-78/+69
* biology/vt: Patch to work with htslib 1.10.2Jason W. Bacon2020-08-035-1/+62
* biology/htslib: Upgrade to 1.10.2Jason W. Bacon2020-08-0312-43/+113
* biology/kallisto: Revert to 0.46.1Jason W. Bacon2020-08-035-60/+32
* biology/diamond: Update to version 2.0.0Joseph Mingrone2020-07-283-14/+4
* Deprecate ports broken for more than 6 monthsAntoine Brodin2020-07-261-0/+2
* Update to 2.0.1Sunpoet Po-Chuan Hsieh2020-07-242-10/+4
* Add rubygem-bio-shell 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+38
* Add rubygem-bio-old-biofetch-emulator 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+33
* Add rubygem-bio-executables 1.0.0Sunpoet Po-Chuan Hsieh2020-07-244-0/+43
* Update devel/tbb to 2020.3 and bump dependent ports' revisionsGanael LAPLANCHE2020-07-171-1/+1
* Unbreak bulk -aAntoine Brodin2020-07-141-1/+1
* biology/phyml: update to 3.3.20200621Fernando Apesteguía2020-07-102-6/+5
* biology/gatk: Update 4.1.7.0 -> 4.1.8.0Yuri Victorovich2020-07-092-6/+6
* biology/cufflinks: fix build on GCC architecturesPiotr Kubaj2020-07-081-1/+1
* Chanse update of devel/libffiNiclas Zeising2020-07-041-0/+1
* biology/psi88: Unbreak build with GCC 10Tobias Kortkamp2020-07-041-0/+1
* biology/bowtie: Unbreak build with GCC 10Tobias Kortkamp2020-07-041-0/+11
* biology/diamond: Update to version 0.9.36Joseph Mingrone2020-07-033-4/+14
* Bump devel/jsoncpp consumers after r540853.Tobias C. Berner2020-06-301-1/+1
* biology/hyphy: Update to version 2.5.15Joseph Mingrone2020-06-282-4/+4
* biology/diamond: Update to version 0.9.35Joseph Mingrone2020-06-272-4/+4
* Move devel/p5-IO-stringy to devel/p5-IO-Stringy and update to 2.113Sunpoet Po-Chuan Hsieh2020-06-261-1/+2
* biology/py-bx-python: Update 0.8.8 -> 0.8.9Yuri Victorovich2020-06-262-4/+5
* biology/seaview: Update version 5.0.3=>5.0.4Muhammad Moinur Rahman2020-06-222-4/+4
* biology/vsearch: Update to 2.15.0Jason W. Bacon2020-06-202-4/+4
* Move devel/swig30 to devel/swig and update to 4.0.1Sunpoet Po-Chuan Hsieh2020-06-171-4/+2
* biology/py-loompy: Update 2.0.17 -> 3.0.6Yuri Victorovich2020-06-162-5/+4
* biology/py-gffutils: Update 0.10 -> 0.10.1Yuri Victorovich2020-06-162-4/+4
* biology/seaview: Update version 5.0.2=>5.0.3Muhammad Moinur Rahman2020-06-142-4/+4
* Unbreak bulk -aAntoine Brodin2020-06-131-1/+1
* biology/picard-tools: CLI tools for manipulating sequencing dataJason W. Bacon2020-06-136-0/+170
* biology/py-biopython: Set python requirement to 3.6+Jason W. Bacon2020-06-131-1/+1
* biology/diamond: Update to version 0.9.34Joseph Mingrone2020-06-122-4/+4
* biology/py-pysam: Update 0.15.4 -> 0.16.0Yuri Victorovich2020-06-092-4/+4
* Add compiler:c++0x to USES to fix build on GCC-based systems:Mark Linimon2020-06-051-1/+1
* biology/bioawk: BWK awk modified for biological dataJason W. Bacon2020-06-055-0/+79
* biology/subread: Read alignment, quantification and mutation discoveryJason W. Bacon2020-06-0518-0/+367
* bioloty/vt: Discovers short variants from Next Generation Sequencing dataJason W. Bacon2020-06-049-0/+147
* biology/diamond: Update to version 0.9.33Joseph Mingrone2020-06-032-4/+4
* biology/hyphy: Update to version 2.5.14Joseph Mingrone2020-05-303-438/+438
* biology/iqtree: Update to version 2.0.6Joseph Mingrone2020-05-302-4/+4
* biology/abyss: Update 2.2.3 -> 2.2.4Yuri Victorovich2020-05-302-5/+4
* Clean up some thingsTobias Kortkamp2020-05-301-1/+2
* biology/py-biopython: Upgrade to 1.77Jason W. Bacon2020-05-292-9/+11
* biology/gatk: Update 4.1.5.0 -> 4.1.7.0Yuri Victorovich2020-05-282-6/+6
* biology/iqtree: Update to version 2.0.5Joseph Mingrone2020-05-282-7/+7
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