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* biology/bowtie2: Reverse switch to devel/onetbbJason W. Bacon2021-01-301-2/+2
* biology/bowtie2: Switch to devel/onetbbJason W. Bacon2021-01-301-1/+2
* biology/vsearch: Update to 2.15.2Jason W. Bacon2021-01-303-10/+11
* Update USES=python: math/py-pandas 1.2.0 requires Python 3.7+Sunpoet Po-Chuan Hsieh2021-01-305-5/+5
* biology/hyphy: Update to version 2.5.27Joseph Mingrone2021-01-272-4/+4
* biology/kallisto: Add -lz for pending hdf5 upgradeJason W. Bacon2021-01-261-1/+2
* biology/bedtools: Upgrade to 2.30.0Jason W. Bacon2021-01-246-34/+46
* biology/haplohseq: Fix example scripts for python 3Jason W. Bacon2021-01-236-43/+81
* biology/bedtools: License changed upstreamJason W. Bacon2021-01-221-1/+1
* biology/gatk: Add the WITH_LARGE_FILES option.Yuri Victorovich2021-01-221-0/+30
* biology/gatk: Update 4.1.8.1 -> 4.1.9.0Yuri Victorovich2021-01-212-6/+6
* Fix build on GCC-based systems by adding compiler:c++14-lang to USES:Mark Linimon2021-01-201-1/+1
* Add compiler:c++11-lang to USES to fix build on GCC-based systems:Mark Linimon2021-01-201-1/+1
* biology/bioparser: Cosmetic changesYuri Victorovich2021-01-191-9/+9
* New port: biology/rampler: Standalone module for sampling genomic sequencesYuri Victorovich2021-01-195-0/+66
* New port: biology/edlib: Fast C++ library for sequence alignment using edit d...Yuri Victorovich2021-01-195-0/+40
* New port: biology/spoa: C++ implementation of the partial order alignment (PO...Yuri Victorovich2021-01-196-0/+166
* New port: biology/biosoup: Collection of C++ header-only data structures for ...Yuri Victorovich2021-01-194-0/+46
* New port: biology/bioparser: C++ header only parsing library for several form...Yuri Victorovich2021-01-194-0/+49
* Mark BROKEN on riscv64 the same as on aarch64.Mark Linimon2021-01-191-2/+3
* Mark BROKEN on riscv64 the same as armv*:Mark Linimon2021-01-191-0/+1
* biology/vsearch: enable on powerpc64lePiotr Kubaj2021-01-161-1/+1
* biology/hyphy: Update to version 2.5.26Joseph Mingrone2021-01-152-5/+4
* biology/haplohseq: Restrict to python3Jason W. Bacon2021-01-152-2/+1
* Hook haplohseq to the buildAntoine Brodin2021-01-141-0/+1
* biology/haplohseq: Resurrect and fix python2 dependencyJason W. Bacon2021-01-1413-0/+308
* Remove PY_SPHINX from ports using Python 3Danilo G. Baio2021-01-141-1/+1
* biology/iqtree: Remove USES=compiler:openmp, fix amd64 clang++ buildJoseph Mingrone2021-01-122-2/+14
* biology/hyphy: Remove USES=compiler:openmpJoseph Mingrone2021-01-111-1/+2
* biology/star: Drop dependency on gccJason W. Bacon2021-01-112-15/+15
* biology/stacks: Drop dependency on gccJason W. Bacon2021-01-111-4/+4
* biology/ncbi-blast+: Drop dependency on gccJason W. Bacon2021-01-112-4/+26
* biology/gcta: Drop dependency on gccJason W. Bacon2021-01-111-10/+4
* biology/fasttree: Drop dependency on gccJason W. Bacon2021-01-111-3/+1
* biology/cd-hit: Drop dependency on gccJason W. Bacon2021-01-111-2/+2
* biology/canu: Drop dependency on gccJason W. Bacon2021-01-111-9/+3
* biology/py-biom-format: Update to version 2.1.10Joseph Mingrone2021-01-112-5/+4
* biology/hyphy: Update to version 2.5.25Joseph Mingrone2021-01-112-4/+4
* biology/pooler: Upgrade to 1.76Jason W. Bacon2021-01-082-4/+4
* biology/gemma: Upgrade to 0.98.3Jason W. Bacon2021-01-023-20/+4
* For ports on riscv64 that fail the same (or similar ways) to aarch64, markMark Linimon2021-01-026-0/+6
* - Update Unipro UGENE port to version 37.0Alexey Dokuchaev2020-12-3113-248/+56
* Drop python 2.7 support from a few portsAntoine Brodin2020-12-289-9/+9
* Restrict to Java 8, since this doesn't compile with Java 11Greg Lewis2020-12-261-0/+1
* scipy 1.5.4 is only compatible with python 3.6+Antoine Brodin2020-12-242-2/+2
* biology/hyphy: Update to version 2.5.24Joseph Mingrone2020-12-202-4/+4
* biology/diamond: Update to version 2.0.6Joseph Mingrone2020-12-202-4/+4
* Set CMAKE options explicitlySunpoet Po-Chuan Hsieh2020-12-201-0/+2
* Add EXPAT, LIBXML and XERCES optionsSunpoet Po-Chuan Hsieh2020-12-191-2/+13
* biology/ngs-sdk: Update 2.10.5 -> 2.10.9Yuri Victorovich2020-12-173-5/+5
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