diff options
| author | Mathieu Arnold <mat@FreeBSD.org> | 2021-04-07 08:06:21 +0000 |
|---|---|---|
| committer | Mathieu Arnold <mat@FreeBSD.org> | 2021-04-07 08:09:01 +0000 |
| commit | cf118ccf875508b9a1c570044c93cfcc82bd455c (patch) | |
| tree | 2c94cfc5a4d4e80512c81686f40530d811bc1425 /biology | |
| parent | e956200e0cb1ab3a412c123fa23aaaf47b1ea8da (diff) | |
| download | ports-cf118ccf875508b9a1c570044c93cfcc82bd455c.tar.gz ports-cf118ccf875508b9a1c570044c93cfcc82bd455c.zip | |
One more small cleanup, forgotten yesterday.
Reported by: lwhsu
Diffstat (limited to 'biology')
104 files changed, 0 insertions, 104 deletions
diff --git a/biology/Makefile b/biology/Makefile index 7528f789ccfc..31a87c33cd7a 100644 --- a/biology/Makefile +++ b/biology/Makefile @@ -1,4 +1,3 @@ - COMMENT = Biology SUBDIR += abyss diff --git a/biology/abyss/Makefile b/biology/abyss/Makefile index a9e9b56b4d76..5f73249d04b0 100644 --- a/biology/abyss/Makefile +++ b/biology/abyss/Makefile @@ -1,4 +1,3 @@ - PORTNAME= abyss DISTVERSION= 2.2.5 CATEGORIES= biology diff --git a/biology/ad2vcf/Makefile b/biology/ad2vcf/Makefile index 2eabd9aeb15e..d876777451f7 100644 --- a/biology/ad2vcf/Makefile +++ b/biology/ad2vcf/Makefile @@ -1,4 +1,3 @@ - PORTNAME= ad2vcf DISTVERSION= 0.1.2 CATEGORIES= biology diff --git a/biology/bamtools/Makefile b/biology/bamtools/Makefile index 97ac57a4c982..b5757d08a16f 100644 --- a/biology/bamtools/Makefile +++ b/biology/bamtools/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bamtools DISTVERSIONPREFIX= v DISTVERSION= 2.5.1 diff --git a/biology/bedtools/Makefile b/biology/bedtools/Makefile index 97516ed51bdc..99de841f40ec 100644 --- a/biology/bedtools/Makefile +++ b/biology/bedtools/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bedtools DISTVERSIONPREFIX= v DISTVERSION= 2.30.0 diff --git a/biology/bioawk/Makefile b/biology/bioawk/Makefile index a3fec4896878..d4ee881f6bb4 100644 --- a/biology/bioawk/Makefile +++ b/biology/bioawk/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bioawk DISTVERSIONPREFIX= v DISTVERSION= 1.0-7 diff --git a/biology/biococoa/Makefile b/biology/biococoa/Makefile index c4b7c1d504e7..fe557b9bc3a8 100644 --- a/biology/biococoa/Makefile +++ b/biology/biococoa/Makefile @@ -1,4 +1,3 @@ - PORTNAME= biococoa PORTVERSION= 2.2.2 PORTREVISION= 7 diff --git a/biology/biolibc/Makefile b/biology/biolibc/Makefile index a4c2b2fe58ff..dfe7d0a7c32b 100644 --- a/biology/biolibc/Makefile +++ b/biology/biolibc/Makefile @@ -1,4 +1,3 @@ - PORTNAME= biolibc DISTVERSION= 0.1.1 CATEGORIES= biology diff --git a/biology/bioparser/Makefile b/biology/bioparser/Makefile index eda76219be08..bd4420d8cd69 100644 --- a/biology/bioparser/Makefile +++ b/biology/bioparser/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bioparser DISTVERSION= 3.0.12-2 DISTVERSIONSUFFIX= -g700e82a diff --git a/biology/biosoup/Makefile b/biology/biosoup/Makefile index ff570145cf6a..f4e9db28e57e 100644 --- a/biology/biosoup/Makefile +++ b/biology/biosoup/Makefile @@ -1,4 +1,3 @@ - PORTNAME= biosoup DISTVERSION= g20201216 CATEGORIES= biology devel diff --git a/biology/bolt-lmm/Makefile b/biology/bolt-lmm/Makefile index 635042699c4d..74284124e40a 100644 --- a/biology/bolt-lmm/Makefile +++ b/biology/bolt-lmm/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bolt-lmm DISTVERSION= 2.3.4 PORTREVISION= 4 diff --git a/biology/bowtie/Makefile b/biology/bowtie/Makefile index 508c7563f29e..5fb9ffdff3f0 100644 --- a/biology/bowtie/Makefile +++ b/biology/bowtie/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bowtie DISTVERSIONPREFIX= v DISTVERSION= 1.1.2 diff --git a/biology/bowtie2/Makefile b/biology/bowtie2/Makefile index 33209677374c..bc507cdcfa2e 100644 --- a/biology/bowtie2/Makefile +++ b/biology/bowtie2/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bowtie2 DISTVERSIONPREFIX= v DISTVERSION= 2.4.2 diff --git a/biology/bwa/Makefile b/biology/bwa/Makefile index 062852d006b0..a6302394411c 100644 --- a/biology/bwa/Makefile +++ b/biology/bwa/Makefile @@ -1,4 +1,3 @@ - PORTNAME= bwa PORTVERSION= 0.7.17 DISTVERSIONPREFIX=v diff --git a/biology/canu/Makefile b/biology/canu/Makefile index c6a6b3e2b747..56ebc0779e5e 100644 --- a/biology/canu/Makefile +++ b/biology/canu/Makefile @@ -1,4 +1,3 @@ - PORTNAME= canu DISTVERSION= 2.1 PORTREVISION= 1 diff --git a/biology/cd-hit/Makefile b/biology/cd-hit/Makefile index d1fcf305ac36..2782ab0e47ac 100644 --- a/biology/cd-hit/Makefile +++ b/biology/cd-hit/Makefile @@ -1,4 +1,3 @@ - PORTNAME= cd-hit DISTVERSIONPREFIX= V DISTVERSION= 4.8.1 diff --git a/biology/checkm/Makefile b/biology/checkm/Makefile index 64b6a458af2e..69b7ae93c969 100644 --- a/biology/checkm/Makefile +++ b/biology/checkm/Makefile @@ -1,4 +1,3 @@ - PORTNAME= CheckM DISTVERSIONPREFIX= v DISTVERSION= 1.0.18 diff --git a/biology/clustal-omega/Makefile b/biology/clustal-omega/Makefile index 1a3d86346fb7..afc129878f68 100644 --- a/biology/clustal-omega/Makefile +++ b/biology/clustal-omega/Makefile @@ -1,4 +1,3 @@ - PORTNAME= clustal-omega DISTVERSION= 1.2.4 CATEGORIES= biology diff --git a/biology/cufflinks/Makefile b/biology/cufflinks/Makefile index dea40422df02..0de2dda73fec 100644 --- a/biology/cufflinks/Makefile +++ b/biology/cufflinks/Makefile @@ -1,4 +1,3 @@ - PORTNAME= cufflinks DISTVERSIONPREFIX= v DISTVERSION= 2.2.1-89 diff --git a/biology/cytoscape/Makefile b/biology/cytoscape/Makefile index 1e0a0cf9d26d..5bfd5ec1b8d4 100644 --- a/biology/cytoscape/Makefile +++ b/biology/cytoscape/Makefile @@ -1,4 +1,3 @@ - PORTNAME= cytoscape DISTVERSION= 3.6.1 CATEGORIES= biology java diff --git a/biology/ddocent/Makefile b/biology/ddocent/Makefile index efd66880294b..bc27815d529c 100644 --- a/biology/ddocent/Makefile +++ b/biology/ddocent/Makefile @@ -1,4 +1,3 @@ - PORTNAME= dDocent DISTVERSIONPREFIX= v DISTVERSION= 2.7.8 diff --git a/biology/diamond/Makefile b/biology/diamond/Makefile index cf8a39df70fc..7d06a5d9f92d 100644 --- a/biology/diamond/Makefile +++ b/biology/diamond/Makefile @@ -1,4 +1,3 @@ - PORTNAME= diamond DISTVERSIONPREFIX= v DISTVERSION= 2.0.8 diff --git a/biology/dsr-pdb/Makefile b/biology/dsr-pdb/Makefile index c7a018d91242..873e2c2a4e12 100644 --- a/biology/dsr-pdb/Makefile +++ b/biology/dsr-pdb/Makefile @@ -1,4 +1,3 @@ - PORTNAME= dsr-pdb DISTVERSION= 1.0.3 PORTREVISION= 5 diff --git a/biology/edlib/Makefile b/biology/edlib/Makefile index f25110575c51..11a6334dc555 100644 --- a/biology/edlib/Makefile +++ b/biology/edlib/Makefile @@ -1,4 +1,3 @@ - PORTNAME= edlib DISTVERSION= 1.2.6.20201202 CATEGORIES= biology diff --git a/biology/fastahack/Makefile b/biology/fastahack/Makefile index dc2f96ec09ac..ef572419c199 100644 --- a/biology/fastahack/Makefile +++ b/biology/fastahack/Makefile @@ -1,4 +1,3 @@ - PORTNAME= fastahack DISTVERSIONPREFIX= v DISTVERSION= 1.0.0 diff --git a/biology/fastool/Makefile b/biology/fastool/Makefile index 1b1cc3220fa4..a7f6de647809 100644 --- a/biology/fastool/Makefile +++ b/biology/fastool/Makefile @@ -1,4 +1,3 @@ - PORTNAME= fastool PORTVERSION= 0.1.4 CATEGORIES= biology diff --git a/biology/fastp/Makefile b/biology/fastp/Makefile index 611df1cf8236..1ccd81494363 100644 --- a/biology/fastp/Makefile +++ b/biology/fastp/Makefile @@ -1,4 +1,3 @@ - PORTNAME= fastp DISTVERSIONPREFIX= v DISTVERSION= 0.20.1 diff --git a/biology/fastqc/Makefile b/biology/fastqc/Makefile index 70d9e2a69f16..b71a1a9778c6 100644 --- a/biology/fastqc/Makefile +++ b/biology/fastqc/Makefile @@ -1,4 +1,3 @@ - PORTNAME= fastqc DISTVERSION= 0.11.9 CATEGORIES= biology java perl5 diff --git a/biology/fasttree/Makefile b/biology/fasttree/Makefile index 6c3aa32eb106..30dd2cd31972 100644 --- a/biology/fasttree/Makefile +++ b/biology/fasttree/Makefile @@ -1,4 +1,3 @@ - PORTNAME= FastTree DISTVERSION= 2.1.10 PORTREVISION= 5 diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile index 0de753ef2f52..ac8deefde71e 100644 --- a/biology/fastx-toolkit/Makefile +++ b/biology/fastx-toolkit/Makefile @@ -1,4 +1,3 @@ - PORTNAME= fastx_toolkit PORTVERSION= 0.0.14 CATEGORIES= biology diff --git a/biology/figtree/Makefile b/biology/figtree/Makefile index f1388ae77f13..f28cb0186320 100644 --- a/biology/figtree/Makefile +++ b/biology/figtree/Makefile @@ -1,4 +1,3 @@ - PORTNAME= figtree DISTVERSIONPREFIX= v DISTVERSION= 1.4.4 diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile index 3109876cfac8..225643cec02b 100644 --- a/biology/freebayes/Makefile +++ b/biology/freebayes/Makefile @@ -1,4 +1,3 @@ - PORTNAME= freebayes DISTVERSIONPREFIX= v DISTVERSION= 1.2.0 diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 1c4bcacbb5d1..11e3971e5dab 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,4 +1,3 @@ - PORTNAME= gatk DISTVERSION= 4.2.0.0 CATEGORIES= biology java diff --git a/biology/gcta/Makefile b/biology/gcta/Makefile index b64ebbc47d7a..67afd90d9a71 100644 --- a/biology/gcta/Makefile +++ b/biology/gcta/Makefile @@ -1,4 +1,3 @@ - PORTNAME= gcta DISTVERSION= 1.26.0 PORTREVISION= 3 diff --git a/biology/gemma/Makefile b/biology/gemma/Makefile index 12645ae26fd1..a2c671aaed3f 100644 --- a/biology/gemma/Makefile +++ b/biology/gemma/Makefile @@ -1,4 +1,3 @@ - PORTNAME= gemma DISTVERSION= 0.98.3 CATEGORIES= biology diff --git a/biology/generand/Makefile b/biology/generand/Makefile index 4a447cb2c293..dc843a03fbc0 100644 --- a/biology/generand/Makefile +++ b/biology/generand/Makefile @@ -1,4 +1,3 @@ - PORTNAME= generand DISTVERSION= 0.1.2 CATEGORIES= biology diff --git a/biology/graphlan/Makefile b/biology/graphlan/Makefile index b7835dbae894..3ff4720566ab 100644 --- a/biology/graphlan/Makefile +++ b/biology/graphlan/Makefile @@ -1,4 +1,3 @@ - PORTNAME= graphlan DISTVERSION= 1.1.3 PORTREVISION= 1 diff --git a/biology/groopm/Makefile b/biology/groopm/Makefile index d922769954f5..70d8027cfb18 100644 --- a/biology/groopm/Makefile +++ b/biology/groopm/Makefile @@ -1,4 +1,3 @@ - PORTNAME= GroopM DISTVERSION= 0.3.4 PORTREVISION= 3 diff --git a/biology/haplohseq/Makefile b/biology/haplohseq/Makefile index 7a4829ca36dd..368c3bb04ed2 100644 --- a/biology/haplohseq/Makefile +++ b/biology/haplohseq/Makefile @@ -1,4 +1,3 @@ - PORTNAME= haplohseq DISTVERSION= 0.1.2 PORTREVISION= 3 diff --git a/biology/hhsuite/Makefile b/biology/hhsuite/Makefile index 29cb06749b49..34aca8ae84ab 100644 --- a/biology/hhsuite/Makefile +++ b/biology/hhsuite/Makefile @@ -1,4 +1,3 @@ - PORTNAME= hhsuite DISTVERSIONPREFIX= v DISTVERSION= 3.3.0 diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile index a43245d8b064..0b440ca813c0 100644 --- a/biology/hisat2/Makefile +++ b/biology/hisat2/Makefile @@ -1,4 +1,3 @@ - PORTNAME= hisat2 DISTVERSION= 2.1.0-23 DISTVERSIONSUFFIX= -g20f333e diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile index e1b362a0aad4..4e6a3cbd7657 100644 --- a/biology/hyphy/Makefile +++ b/biology/hyphy/Makefile @@ -1,4 +1,3 @@ - PORTNAME= hyphy DISTVERSION= 2.5.29 CATEGORIES= biology diff --git a/biology/igv/Makefile b/biology/igv/Makefile index 0ba00f650d05..d514583cb41a 100644 --- a/biology/igv/Makefile +++ b/biology/igv/Makefile @@ -1,4 +1,3 @@ - PORTNAME= igv DISTVERSIONPREFIX= v DISTVERSION= 2.9.4 diff --git a/biology/infernal/Makefile b/biology/infernal/Makefile index 54b41cacb118..5c1717abd965 100644 --- a/biology/infernal/Makefile +++ b/biology/infernal/Makefile @@ -1,4 +1,3 @@ - PORTNAME= infernal PORTVERSION= 1.1.3 CATEGORIES= biology diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile index addad8bb172e..48852759c0e9 100644 --- a/biology/iqtree/Makefile +++ b/biology/iqtree/Makefile @@ -1,4 +1,3 @@ - PORTNAME= iqtree DISTVERSIONPREFIX= v DISTVERSION= 2.0.6 diff --git a/biology/jellyfish/Makefile b/biology/jellyfish/Makefile index 2e0bc33c3315..d84f96e88420 100644 --- a/biology/jellyfish/Makefile +++ b/biology/jellyfish/Makefile @@ -1,4 +1,3 @@ - PORTNAME= Jellyfish DISTVERSIONPREFIX= v DISTVERSION= 2.2.10 diff --git a/biology/kallisto/Makefile b/biology/kallisto/Makefile index 418975019141..996d22ee8720 100644 --- a/biology/kallisto/Makefile +++ b/biology/kallisto/Makefile @@ -1,4 +1,3 @@ - PORTNAME= kallisto DISTVERSIONPREFIX= v DISTVERSION= 0.46.1 diff --git a/biology/libbigwig/Makefile b/biology/libbigwig/Makefile index 07a3bce27232..62239103ff1e 100644 --- a/biology/libbigwig/Makefile +++ b/biology/libbigwig/Makefile @@ -1,4 +1,3 @@ - PORTNAME= libbigwig DISTVERSION= 0.4.6 CATEGORIES= biology diff --git a/biology/libgtextutils/Makefile b/biology/libgtextutils/Makefile index 9746d9dec07e..6de2b7cf460e 100644 --- a/biology/libgtextutils/Makefile +++ b/biology/libgtextutils/Makefile @@ -1,4 +1,3 @@ - PORTNAME= libgtextutils DISTVERSION= 0.7 CATEGORIES= biology diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 1b5b18d27882..e8570bd99479 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,4 +1,3 @@ - PORTNAME= minimap2 DISTVERSIONPREFIX= v DISTVERSION= 2.17 diff --git a/biology/mothur/Makefile b/biology/mothur/Makefile index 75ab13385989..cd379b8b9e23 100644 --- a/biology/mothur/Makefile +++ b/biology/mothur/Makefile @@ -1,4 +1,3 @@ - PORTNAME= mothur DISTVERSIONPREFIX= v DISTVERSION= 1.43.0 diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index a8015939346f..d66f6c71e1e5 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,4 +1,3 @@ - PORTNAME= ncbi-blast+ DISTVERSION= 2.11.0 PORTREVISION= 1 diff --git a/biology/ncbi-cxx-toolkit/Makefile b/biology/ncbi-cxx-toolkit/Makefile index 5a66beb0b60d..d8ab6730f753 100644 --- a/biology/ncbi-cxx-toolkit/Makefile +++ b/biology/ncbi-cxx-toolkit/Makefile @@ -1,4 +1,3 @@ - PORTNAME= ncbi-cxx-toolkit DISTVERSION= 22_0_0 CATEGORIES= biology science devel diff --git a/biology/ngs-sdk/Makefile b/biology/ngs-sdk/Makefile index 7c4199fcd783..efd286d1a0d4 100644 --- a/biology/ngs-sdk/Makefile +++ b/biology/ngs-sdk/Makefile @@ -1,4 +1,3 @@ - PORTNAME= ngs DISTVERSION= 2.11.0 CATEGORIES= biology diff --git a/biology/p5-TrimGalore/Makefile b/biology/p5-TrimGalore/Makefile index a2edbf6d5609..b3de61f2fe99 100644 --- a/biology/p5-TrimGalore/Makefile +++ b/biology/p5-TrimGalore/Makefile @@ -1,4 +1,3 @@ - PORTNAME= TrimGalore DISTVERSION= 0.6.5 CATEGORIES= biology perl5 python diff --git a/biology/p5-transdecoder/Makefile b/biology/p5-transdecoder/Makefile index b5575f733953..4764a26a1b4f 100644 --- a/biology/p5-transdecoder/Makefile +++ b/biology/p5-transdecoder/Makefile @@ -1,4 +1,3 @@ - PORTNAME= transdecoder DISTVERSIONPREFIX= TransDecoder-v DISTVERSION= 5.4.0 diff --git a/biology/pbbam/Makefile b/biology/pbbam/Makefile index ef0fd1bd2539..6e7b508c36f0 100644 --- a/biology/pbbam/Makefile +++ b/biology/pbbam/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pbbam DISTVERSION= 0.18.0 # Test with biology/unanimity before upgrading! PORTREVISION= 5 diff --git a/biology/pbseqan/Makefile b/biology/pbseqan/Makefile index 3dc2d4f8a968..2753dc6c27d5 100644 --- a/biology/pbseqan/Makefile +++ b/biology/pbseqan/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pbseqan DISTVERSION= g20171011 CATEGORIES= biology diff --git a/biology/pear-merger/Makefile b/biology/pear-merger/Makefile index 5dd65461d4ff..6a4544756905 100644 --- a/biology/pear-merger/Makefile +++ b/biology/pear-merger/Makefile @@ -1,4 +1,3 @@ - # Newer versions require registration to download and the site is unreliable. PORTNAME= pear diff --git a/biology/phrap/Makefile b/biology/phrap/Makefile index 81facf8d9681..3ef2b051c94d 100644 --- a/biology/phrap/Makefile +++ b/biology/phrap/Makefile @@ -1,4 +1,3 @@ - PORTNAME= phrap PORTVERSION= 1.090518 CATEGORIES= biology diff --git a/biology/picard-tools/Makefile b/biology/picard-tools/Makefile index 28887777f71f..4e970306080c 100644 --- a/biology/picard-tools/Makefile +++ b/biology/picard-tools/Makefile @@ -1,4 +1,3 @@ - PORTNAME= picard DISTVERSION= 2.22.9 CATEGORIES= biology java diff --git a/biology/plink/Makefile b/biology/plink/Makefile index a74b81d8bb9b..40dc0c77ff3a 100644 --- a/biology/plink/Makefile +++ b/biology/plink/Makefile @@ -1,4 +1,3 @@ - PORTNAME= plink DISTVERSIONPREFIX= v DISTVERSION= 1.90b6.17 diff --git a/biology/pooler/Makefile b/biology/pooler/Makefile index 114a06a26562..ee463444f7e8 100644 --- a/biology/pooler/Makefile +++ b/biology/pooler/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pooler DISTVERSIONPREFIX= v DISTVERSION= 1.76 diff --git a/biology/prodigal/Makefile b/biology/prodigal/Makefile index 8f0582e6f0c1..95d7e0ac9d38 100644 --- a/biology/prodigal/Makefile +++ b/biology/prodigal/Makefile @@ -1,4 +1,3 @@ - PORTNAME= prodigal DISTVERSIONPREFIX= v DISTVERSION= 2.6.3-7 diff --git a/biology/prodigy-lig/Makefile b/biology/prodigy-lig/Makefile index 888d225d9e5c..634a2cf7575d 100644 --- a/biology/prodigy-lig/Makefile +++ b/biology/prodigy-lig/Makefile @@ -1,4 +1,3 @@ - PORTNAME= prodigy-lig DISTVERSIONPREFIX= v DISTVERSION= 1.0.0-3 diff --git a/biology/py-Genesis-PyAPI/Makefile b/biology/py-Genesis-PyAPI/Makefile index e48c8f11a94f..c275c9d6770d 100644 --- a/biology/py-Genesis-PyAPI/Makefile +++ b/biology/py-Genesis-PyAPI/Makefile @@ -1,4 +1,3 @@ - PORTNAME= Genesis-PyAPI DISTVERSION= 1.2.1 CATEGORIES= biology python diff --git a/biology/py-biom-format/Makefile b/biology/py-biom-format/Makefile index c44eea2387ee..6823ba1326fa 100644 --- a/biology/py-biom-format/Makefile +++ b/biology/py-biom-format/Makefile @@ -1,4 +1,3 @@ - PORTNAME= biom-format PORTVERSION= 2.1.10 CATEGORIES= biology python diff --git a/biology/py-cutadapt/Makefile b/biology/py-cutadapt/Makefile index ebe1d81373e2..7e7e85b352c1 100644 --- a/biology/py-cutadapt/Makefile +++ b/biology/py-cutadapt/Makefile @@ -1,4 +1,3 @@ - PORTNAME= cutadapt DISTVERSION= 3.3 CATEGORIES= biology python diff --git a/biology/py-dnaio/Makefile b/biology/py-dnaio/Makefile index fa86fc8f79af..3f7c013b8d84 100644 --- a/biology/py-dnaio/Makefile +++ b/biology/py-dnaio/Makefile @@ -1,4 +1,3 @@ - PORTNAME= dnaio DISTVERSION= 0.5.0 # py-cutadapt 3.2 requires 0.5.x CATEGORIES= biology python diff --git a/biology/py-ete3/Makefile b/biology/py-ete3/Makefile index b400604838ba..3ffa71d1dfc6 100644 --- a/biology/py-ete3/Makefile +++ b/biology/py-ete3/Makefile @@ -1,4 +1,3 @@ - PORTNAME= ete3 DISTVERSION= 3.1.2 PORTREVISION= 4 diff --git a/biology/py-gffutils/Makefile b/biology/py-gffutils/Makefile index 667f0bea625e..aa19e9571f97 100644 --- a/biology/py-gffutils/Makefile +++ b/biology/py-gffutils/Makefile @@ -1,4 +1,3 @@ - PORTNAME= gffutils DISTVERSION= 0.10.1 CATEGORIES= biology python diff --git a/biology/py-gtfparse/Makefile b/biology/py-gtfparse/Makefile index 492f67fb80e5..e6660fc52287 100644 --- a/biology/py-gtfparse/Makefile +++ b/biology/py-gtfparse/Makefile @@ -1,4 +1,3 @@ - PORTNAME= gtfparse DISTVERSION= 1.2.1 CATEGORIES= biology python diff --git a/biology/py-hits/Makefile b/biology/py-hits/Makefile index d67f308cdb47..82b38c228994 100644 --- a/biology/py-hits/Makefile +++ b/biology/py-hits/Makefile @@ -1,4 +1,3 @@ - PORTNAME= hits PORTVERSION= 0.1 CATEGORIES= biology python diff --git a/biology/py-loompy/Makefile b/biology/py-loompy/Makefile index b150d89cd5b1..e69d6b660ee9 100644 --- a/biology/py-loompy/Makefile +++ b/biology/py-loompy/Makefile @@ -1,4 +1,3 @@ - PORTNAME= loompy DISTVERSION= 3.0.6 CATEGORIES= biology python diff --git a/biology/py-macs2/Makefile b/biology/py-macs2/Makefile index 7aced2a010d2..2b363cc7d941 100644 --- a/biology/py-macs2/Makefile +++ b/biology/py-macs2/Makefile @@ -1,4 +1,3 @@ - PORTNAME= macs2 DISTVERSIONPREFIX= v DISTVERSION= 2.2.7.1 diff --git a/biology/py-multiqc/Makefile b/biology/py-multiqc/Makefile index 228c79e18a94..a35165a273fa 100644 --- a/biology/py-multiqc/Makefile +++ b/biology/py-multiqc/Makefile @@ -1,4 +1,3 @@ - PORTNAME= multiqc DISTVERSION= 1.10 CATEGORIES= biology python diff --git a/biology/py-orange3-bioinformatics/Makefile b/biology/py-orange3-bioinformatics/Makefile index 4596c21df893..5ca207f97b00 100644 --- a/biology/py-orange3-bioinformatics/Makefile +++ b/biology/py-orange3-bioinformatics/Makefile @@ -1,4 +1,3 @@ - PORTNAME= orange3-bioinformatics DISTVERSION= 3.2.2 PORTREVISION= 3 diff --git a/biology/py-orange3-single-cell/Makefile b/biology/py-orange3-single-cell/Makefile index 42ffe42482f6..69602c726a61 100644 --- a/biology/py-orange3-single-cell/Makefile +++ b/biology/py-orange3-single-cell/Makefile @@ -1,4 +1,3 @@ - PORTNAME= orange3-single-cell DISTVERSION= 0.8.2 PORTREVISION= 3 diff --git a/biology/py-pandas-charm/Makefile b/biology/py-pandas-charm/Makefile index 2b9d01cd150d..1b556e5faba3 100644 --- a/biology/py-pandas-charm/Makefile +++ b/biology/py-pandas-charm/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pandas-charm DISTVERSION= 0.3.0 PORTREVISION= 1 diff --git a/biology/py-pyfaidx/Makefile b/biology/py-pyfaidx/Makefile index ea51b5bf2400..d401bc2691ce 100644 --- a/biology/py-pyfaidx/Makefile +++ b/biology/py-pyfaidx/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pyfaidx DISTVERSION= 0.5.9.2 CATEGORIES= biology python diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index 62d4852ba20e..1726053f93c1 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,4 +1,3 @@ - PORTNAME= pysam DISTVERSION= 0.16.0.1 CATEGORIES= biology python diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile index ecac0afacd6e..65253e23c183 100644 --- a/biology/py-scikit-bio/Makefile +++ b/biology/py-scikit-bio/Makefile @@ -1,4 +1,3 @@ - PORTNAME= scikit-bio PORTVERSION= 0.5.6 CATEGORIES= biology education python diff --git a/biology/py-xenaPython/Makefile b/biology/py-xenaPython/Makefile index 038a26df1c3a..b629d7c5d2c7 100644 --- a/biology/py-xenaPython/Makefile +++ b/biology/py-xenaPython/Makefile @@ -1,4 +1,3 @@ - PORTNAME= xenaPython DISTVERSION= 1.0.14 CATEGORIES= biology python diff --git a/biology/rainbow/Makefile b/biology/rainbow/Makefile index 8fbbd5e6d6ff..a1878eac6988 100644 --- a/biology/rainbow/Makefile +++ b/biology/rainbow/Makefile @@ -1,4 +1,3 @@ - PORTNAME= rainbow DISTVERSION= 2.0.4 CATEGORIES= biology diff --git a/biology/rampler/Makefile b/biology/rampler/Makefile index 102720c30d7d..b5b5fc65314b 100644 --- a/biology/rampler/Makefile +++ b/biology/rampler/Makefile @@ -1,4 +1,3 @@ - PORTNAME= rampler DISTVERSION= 2.0.0 CATEGORIES= biology diff --git a/biology/scrm/Makefile b/biology/scrm/Makefile index 30c2bf5d1952..875f5e2cd257 100644 --- a/biology/scrm/Makefile +++ b/biology/scrm/Makefile @@ -1,4 +1,3 @@ - PORTNAME= scrm DISTVERSIONPREFIX= v DISTVERSION= 1.7.4 diff --git a/biology/seqtk/Makefile b/biology/seqtk/Makefile index d1c0d5888e1c..820432492ed8 100644 --- a/biology/seqtk/Makefile +++ b/biology/seqtk/Makefile @@ -1,4 +1,3 @@ - PORTNAME= seqtk DISTVERSION= 1.2-8 DISTVERSIONSUFFIX= -gd210c57 diff --git a/biology/slclust/Makefile b/biology/slclust/Makefile index cc8936c2c92e..b6c220a94935 100644 --- a/biology/slclust/Makefile +++ b/biology/slclust/Makefile @@ -1,4 +1,3 @@ - PORTNAME= slclust PORTVERSION= 2010.02.02 CATEGORIES= biology diff --git a/biology/smithwaterman/Makefile b/biology/smithwaterman/Makefile index 6f0d9c7cabea..3c8c0b3c8208 100644 --- a/biology/smithwaterman/Makefile +++ b/biology/smithwaterman/Makefile @@ -1,4 +1,3 @@ - PORTNAME= smithwaterman DISTVERSION= g20160702 CATEGORIES= biology diff --git a/biology/spoa/Makefile b/biology/spoa/Makefile index 0698419832c7..05da6a20b28e 100644 --- a/biology/spoa/Makefile +++ b/biology/spoa/Makefile @@ -1,4 +1,3 @@ - PORTNAME= spoa DISTVERSION= 4.0.7 PORTREVISION= 2 diff --git a/biology/stacks/Makefile b/biology/stacks/Makefile index 78da9d8abc49..cbd6bf3912d3 100644 --- a/biology/stacks/Makefile +++ b/biology/stacks/Makefile @@ -1,4 +1,3 @@ - PORTNAME= stacks DISTVERSION= 2.4 PORTREVISION= 2 diff --git a/biology/star/Makefile b/biology/star/Makefile index 5eb6e6f8ecbb..67da9de6c511 100644 --- a/biology/star/Makefile +++ b/biology/star/Makefile @@ -1,4 +1,3 @@ - PORTNAME= STAR DISTVERSION= 2.7.3a PORTREVISION= 1 diff --git a/biology/stringtie/Makefile b/biology/stringtie/Makefile index b841c5a8f845..5e261632b31c 100644 --- a/biology/stringtie/Makefile +++ b/biology/stringtie/Makefile @@ -1,4 +1,3 @@ - PORTNAME= stringtie DISTVERSION= 2.1.1 CATEGORIES= biology diff --git a/biology/subread/Makefile b/biology/subread/Makefile index ba6d1e86887f..44ff5508a8dc 100644 --- a/biology/subread/Makefile +++ b/biology/subread/Makefile @@ -1,4 +1,3 @@ - PORTNAME= subread DISTVERSION= 2.0.2 DISTVERSIONSUFFIX= -source diff --git a/biology/tabixpp/Makefile b/biology/tabixpp/Makefile index 48d504146e73..688838e66527 100644 --- a/biology/tabixpp/Makefile +++ b/biology/tabixpp/Makefile @@ -1,4 +1,3 @@ - PORTNAME= tabixpp DISTVERSIONPREFIX= v DISTVERSION= 1.0.0-10 diff --git a/biology/treekin/Makefile b/biology/treekin/Makefile index afed6f1f026c..9ee58d87a129 100644 --- a/biology/treekin/Makefile +++ b/biology/treekin/Makefile @@ -1,4 +1,3 @@ - PORTNAME= treekin DISTVERSION= 0.5.1 PORTREVISION= 2 diff --git a/biology/trimadap/Makefile b/biology/trimadap/Makefile index 0c9d54b1b5db..b709d3261e52 100644 --- a/biology/trimadap/Makefile +++ b/biology/trimadap/Makefile @@ -1,4 +1,3 @@ - PORTNAME= trimadap DISTVERSION= 0.1-3 DISTVERSIONSUFFIX= -gddfef21 diff --git a/biology/vcf-split/Makefile b/biology/vcf-split/Makefile index 0f9fde5913b8..9a750162a1e4 100644 --- a/biology/vcf-split/Makefile +++ b/biology/vcf-split/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vcf-split DISTVERSION= 0.1.1 CATEGORIES= biology diff --git a/biology/vcf2hap/Makefile b/biology/vcf2hap/Makefile index 55d960ec4372..ea753f4a5b81 100644 --- a/biology/vcf2hap/Makefile +++ b/biology/vcf2hap/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vcf2hap DISTVERSION= 0.1.2 CATEGORIES= biology diff --git a/biology/vcflib/Makefile b/biology/vcflib/Makefile index d28fdb59c8e4..ce0cdd503e41 100644 --- a/biology/vcflib/Makefile +++ b/biology/vcflib/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vcflib DISTVERSIONPREFIX= v DISTVERSION= 1.0.0-rc1-130 diff --git a/biology/vcftools/Makefile b/biology/vcftools/Makefile index 982aabac382d..95367e64509f 100644 --- a/biology/vcftools/Makefile +++ b/biology/vcftools/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vcftools PORTVERSION= 0.1.16 DISTVERSIONPREFIX= v diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile index 0a5d06488a4a..e375ec722c80 100644 --- a/biology/viennarna/Makefile +++ b/biology/viennarna/Makefile @@ -1,4 +1,3 @@ - PORTNAME= viennarna DISTVERSION= 2.4.17 CATEGORIES= biology diff --git a/biology/vsearch/Makefile b/biology/vsearch/Makefile index 72f0a40af1b3..544ea5033680 100644 --- a/biology/vsearch/Makefile +++ b/biology/vsearch/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vsearch DISTVERSIONPREFIX= v DISTVERSION= 2.16.0 diff --git a/biology/vt/Makefile b/biology/vt/Makefile index 2d48f2395b1e..9e5e69141b6d 100644 --- a/biology/vt/Makefile +++ b/biology/vt/Makefile @@ -1,4 +1,3 @@ - PORTNAME= vt DISTVERSION= 0.57721 PORTREVISION= 2 |