| Commit message (Expand) | Author | Age | Files | Lines |
|---|
| * | biology/abyss: Update 2.2.5 -> 2.3.0-3 | Yuri Victorovich | 2021-04-18 | 3 | -6/+11 |
| * | biology/snpeff: Genetic variant annotation and effect prediction toolbox | Jason W. Bacon | 2021-04-18 | 7 | -0/+180 |
| * | biology/bbmap: BBMap short read aligner, and other bioinformatic tools | Jason W. Bacon | 2021-04-18 | 6 | -0/+2064 |
| * | biology/bowtie2: Add support for powerpc64le | Jason W. Bacon | 2021-04-18 | 3 | -4/+17 |
| * | biology/readseq: Remove $FreeBSD$ tag inserted to silence portlint | Jason W. Bacon | 2021-04-18 | 1 | -2/+0 |
| * | biology/readseq: Read and reformat biosequences, Java command-line version | Jason W. Bacon | 2021-04-18 | 5 | -0/+38 |
| * | biology/seqkit: Change WWW to the project URL (from GitHub URL) | Yuri Victorovich | 2021-04-17 | 1 | -1/+1 |
| * | New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi... | Yuri Victorovich | 2021-04-16 | 4 | -0/+42 |
| * | biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl... | Yuri Victorovich | 2021-04-15 | 1 | -1/+1 |
| * | Clean up some things | Tobias Kortkamp | 2021-04-15 | 1 | -1/+0 |
| * | devel/onetbb: Update to 2021.2.0 and bump dependencies | Ganael LAPLANCHE | 2021-04-14 | 1 | -1/+1 |
| * | biology/diamond: Update to 2.0.9 | Joseph Mingrone | 2021-04-13 | 2 | -4/+4 |
| * | biology/mothur: Update to 1.45.2 | Jason W. Bacon | 2021-04-13 | 4 | -28/+25 |
| * | biology/py-crossmap: Lift over genomics coordinates between assemblies | Jason W. Bacon | 2021-04-12 | 6 | -0/+59 |
| * | biology/py-bigwig: Python access to bigWig files using libBigWig | Jason W. Bacon | 2021-04-12 | 4 | -0/+30 |
| * | biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ... | Yuri Victorovich | 2021-04-12 | 2 | -3/+18 |
| * | biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a... | Yuri Victorovich | 2021-04-12 | 2 | -3/+9 |
| * | New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc... | Yuri Victorovich | 2021-04-12 | 31 | -0/+947 |
| * | biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re... | Yuri Victorovich | 2021-04-12 | 7 | -102/+62 |
| * | biology/minimap2: Update to 2.18 | Jason W. Bacon | 2021-04-11 | 3 | -9/+7 |
| * | biology/vsearch: Update to 2.17.0 | Jason W. Bacon | 2021-04-10 | 2 | -4/+4 |
| * | biology/hyphy: Update to 2.5.30 | Joseph Mingrone | 2021-04-08 | 2 | -4/+4 |
| * | Remove expired ports: | Rene Ladan | 2021-04-07 | 17 | -380/+0 |
| * | One more small cleanup, forgotten yesterday. | Mathieu Arnold | 2021-04-07 | 104 | -104/+0 |
| * | all: Remove all other $FreeBSD keywords. | Mathieu Arnold | 2021-04-06 | 3 | -7/+1 |
| * | Remove # $FreeBSD$ from Makefiles. | Mathieu Arnold | 2021-04-06 | 187 | -188/+0 |
| * | biology/pear-merger: enable on aarch64, armv6, armv7, riscv64 | Piotr Kubaj | 2021-04-06 | 1 | -5/+0 |
| * | biology/trimadap: fix build on powerpc64le | Piotr Kubaj | 2021-04-06 | 1 | -1/+8 |
| * | biology/pear-merger: fix build on non-x86 | Piotr Kubaj | 2021-04-06 | 1 | -0/+6 |
| * | biology/subread: Update to 2.0.2 | Jason W. Bacon | 2021-03-30 | 4 | -19/+20 |
| * | biology/molden: Fix build with gfortran10 | Yuri Victorovich | 2021-03-29 | 1 | -1/+9 |
| * | biology/igv: Update 2.8.13 -> 2.9.4 | Yuri Victorovich | 2021-03-28 | 3 | -42/+44 |
| * | biology/vcflib: fix build on powerpc64le | Piotr Kubaj | 2021-03-28 | 1 | -0/+7 |
| * | biology/vsearch: Update to 2.16.0 | Jason W. Bacon | 2021-03-24 | 2 | -4/+4 |
| * | Mark ports recursively depending on Python 2.7 for expiration on June 23. | Rene Ladan | 2021-03-24 | 2 | -0/+6 |
| * | biology/vcf2hap: Generate .hap file from VCF for haplohseq | Jason W. Bacon | 2021-03-23 | 4 | -0/+35 |
| * | biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF file | Jason W. Bacon | 2021-03-23 | 4 | -0/+36 |
| * | - Update Unipro UGENE to version 38.0 | Alexey Dokuchaev | 2021-03-23 | 5 | -28/+8 |
| * | Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms, | Alexey Dokuchaev | 2021-03-22 | 1 | -1/+1 |
| * | biology/vcf-split: Split a multi-sample VCF into single-sample VCFs | Jason W. Bacon | 2021-03-21 | 4 | -0/+35 |
| * | biology/biolibc: Low-level high-performance bioinformatics library | Jason W. Bacon | 2021-03-21 | 5 | -0/+33 |
| * | biology/htslib: Update to 1.12 | Jason W. Bacon | 2021-03-20 | 17 | -148/+32 |
| * | biology/generand: Update to 0.1.2 | Jason W. Bacon | 2021-03-20 | 2 | -4/+4 |
| * | biology/py-multiqc: Update to 1.10 | Jason W. Bacon | 2021-03-20 | 2 | -4/+5 |
| * | biology/ngs-sdk: Update 2.10.9 -> 2.11.0 | Yuri Victorovich | 2021-03-20 | 3 | -5/+6 |
| * | PyQt5: Update PyQt5 to 5.15.4 and py-qtbuilder to 1.9.1 | Loïc Bartoletti | 2021-03-16 | 1 | -1/+1 |
| * | biology/generand: Generate random genomic data in FAST[AQ], SAM, or VCF format | Jason W. Bacon | 2021-03-15 | 4 | -0/+27 |
| * | biology/abyss: Add PORTSCOUT line | Yuri Victorovich | 2021-03-14 | 1 | -0/+2 |
| * | Move: biology/py-fastTSNE -> math/py-openTSNE | Yuri Victorovich | 2021-03-13 | 5 | -49/+0 |
| * | biology/gatk: Fix fetch | Yuri Victorovich | 2021-03-13 | 1 | -5/+5 |
