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* biology/py-crossmap: Update to 0.5.4Jason W. Bacon2021-04-212-5/+4
* biology/py-crossmap: Fix build with Python 3.8+Kai Knoblich2021-04-211-1/+5
* biology/py-bigwig: Fix packaging with Python 3.8+Kai Knoblich2021-04-211-1/+1
* New port: biology/py-resdk: Resolwe SDK to interact with Resolwe server and R...Yuri Victorovich2021-04-204-0/+38
* biology/snpeff: Improvements to Makefile and patchesJason W. Bacon2021-04-194-12/+13
* biology/abyss: Update 2.2.5 -> 2.3.0-3Yuri Victorovich2021-04-183-6/+11
* biology/snpeff: Genetic variant annotation and effect prediction toolboxJason W. Bacon2021-04-187-0/+180
* biology/bbmap: BBMap short read aligner, and other bioinformatic toolsJason W. Bacon2021-04-186-0/+2064
* biology/bowtie2: Add support for powerpc64leJason W. Bacon2021-04-183-4/+17
* biology/readseq: Remove $FreeBSD$ tag inserted to silence portlintJason W. Bacon2021-04-181-2/+0
* biology/readseq: Read and reformat biosequences, Java command-line versionJason W. Bacon2021-04-185-0/+38
* biology/seqkit: Change WWW to the project URL (from GitHub URL)Yuri Victorovich2021-04-171-1/+1
* New port: biology/seqkit: Cross-platform and ultrafast toolkit for FASTA/Q fi...Yuri Victorovich2021-04-164-0/+42
* biology/ngs-sdk: Fix build on non-amd64 architectures that was broken by expl...Yuri Victorovich2021-04-151-1/+1
* Clean up some thingsTobias Kortkamp2021-04-151-1/+0
* devel/onetbb: Update to 2021.2.0 and bump dependenciesGanael LAPLANCHE2021-04-141-1/+1
* biology/diamond: Update to 2.0.9Joseph Mingrone2021-04-132-4/+4
* biology/mothur: Update to 1.45.2Jason W. Bacon2021-04-134-28/+25
* biology/py-crossmap: Lift over genomics coordinates between assembliesJason W. Bacon2021-04-126-0/+59
* biology/py-bigwig: Python access to bigWig files using libBigWigJason W. Bacon2021-04-124-0/+30
* biology/ncbi-vdb: Restore static libs installed with symlinks as shared libs ...Yuri Victorovich2021-04-122-3/+18
* biology/ngs-sdk: Restore static libs installed with symlinks as shared libs a...Yuri Victorovich2021-04-122-3/+9
* New port: biology/ncbi-vdb: NCBI's virtualized back-end for accessing Sequenc...Yuri Victorovich2021-04-1231-0/+947
* biology/ngs-sdk: Improve the 'install' target and other parts of Makefile, re...Yuri Victorovich2021-04-127-102/+62
* biology/minimap2: Update to 2.18Jason W. Bacon2021-04-113-9/+7
* biology/vsearch: Update to 2.17.0Jason W. Bacon2021-04-102-4/+4
* biology/hyphy: Update to 2.5.30Joseph Mingrone2021-04-082-4/+4
* Remove expired ports:Rene Ladan2021-04-0717-380/+0
* One more small cleanup, forgotten yesterday.Mathieu Arnold2021-04-07104-104/+0
* all: Remove all other $FreeBSD keywords.Mathieu Arnold2021-04-063-7/+1
* Remove # $FreeBSD$ from Makefiles.Mathieu Arnold2021-04-06187-188/+0
* biology/pear-merger: enable on aarch64, armv6, armv7, riscv64Piotr Kubaj2021-04-061-5/+0
* biology/trimadap: fix build on powerpc64lePiotr Kubaj2021-04-061-1/+8
* biology/pear-merger: fix build on non-x86Piotr Kubaj2021-04-061-0/+6
* biology/subread: Update to 2.0.2Jason W. Bacon2021-03-304-19/+20
* biology/molden: Fix build with gfortran10Yuri Victorovich2021-03-291-1/+9
* biology/igv: Update 2.8.13 -> 2.9.4Yuri Victorovich2021-03-283-42/+44
* biology/vcflib: fix build on powerpc64lePiotr Kubaj2021-03-281-0/+7
* biology/vsearch: Update to 2.16.0Jason W. Bacon2021-03-242-4/+4
* Mark ports recursively depending on Python 2.7 for expiration on June 23.Rene Ladan2021-03-242-0/+6
* biology/vcf2hap: Generate .hap file from VCF for haplohseqJason W. Bacon2021-03-234-0/+35
* biology/ad2vcf: Add allelic depth info from a SAM stream to a VCF fileJason W. Bacon2021-03-234-0/+36
* - Update Unipro UGENE to version 38.0Alexey Dokuchaev2021-03-235-28/+8
* Fix spelling mistakes, typos, poor wording, hyphenation, jargonisms,Alexey Dokuchaev2021-03-221-1/+1
* biology/vcf-split: Split a multi-sample VCF into single-sample VCFsJason W. Bacon2021-03-214-0/+35
* biology/biolibc: Low-level high-performance bioinformatics libraryJason W. Bacon2021-03-215-0/+33
* biology/htslib: Update to 1.12Jason W. Bacon2021-03-2017-148/+32
* biology/generand: Update to 0.1.2Jason W. Bacon2021-03-202-4/+4
* biology/py-multiqc: Update to 1.10Jason W. Bacon2021-03-202-4/+5
* biology/ngs-sdk: Update 2.10.9 -> 2.11.0Yuri Victorovich2021-03-203-5/+6
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